FMO09778.5prime Sequence
1142 bp (1057 high quality bases) assembled on 2010-10-20
> FMO09778.5prime
CAGTCGACATGTCTCATCGTAAGTTCTCGGCACCCCGCCATGGCTCCATG
GCCTTCTACCCCAAGAAGCGCTCAGCTCGCCATCGCGGTAAGGTTAAGGC
CTTCCCCAAGGATGACGCCAGCAAGCCAGTCCATCTGACCTGCTTCATCG
GCTACAAGGCCGGCATGACCCACATTGTGCGCGAGGCCGATCGTCCTGGC
TCCAAGATCAACAAGAAGGAGGTGGTCGAGGCCGTCACCGTTCTGGAGAC
CCCGCCCATGATTGTGGTCGGTGCTGTCGGCTACATCGAGACTCCCTTCG
GTCTGCGTGCCCTGGTCAACGTTTGGGCCCAGCATCTCTCCGAGGAGTGC
CGTCGTCGCTTCTACAAGAACTGGTACAAGAGCAAGAAGAAGGCATTCAC
CAAGGCCAGCAAGAAGTGGACCGATGATCTCGGCAAGAAGAGCATCGAGA
ATGACTTCCGCAAGATGCTGCGCTACTGCAAGGTGATCCGTGTGATTGCC
CACTCGCAGATCCGCTTGATCAAGCAGCGCCAAAAGAAGGCCCATGTCAT
GGAGATCCAGCTGAACGGCGGCTCCATCGAGGACAAGGTCAAGTGGGCTC
GCGAGCATTTGGAGAAGCCCATCCAGGTCAGCAACGTCTTCGGCCAGGAC
GAGATGATCGACTGCGTTGGTGTGACCAAGGGTAAGGGTTTCAAGGGTGT
CACCTCGCGTTGGCACACCAAGAAGCTGCCCCGCAAGACGCACAAGGGTC
TGCGCAAGGTGGCCTGTATTGGTGCCTGGGCATCCGTCGCGTGTGTCCAC
CACCGTGGCCCGTGCCGGTCAGAAGGGTTACCACCACCGTACCGAGATCA
ACAAGAAGATCTACCGCATCGGCGCTGGCATCCACACCAGGACGGCAAGG
TCATCAAGAACAACGCCTCCACCGAGTACGATCTGACCGACAGAGCATCA
CGCCCATGGGTGGCTTCCCCCACTACGTGAGGTCAACAACGACTTCGTCA
TGATCAGGCTGCTGCATCGCTTCAAGAAGCGCATCATCACCCTGGCGCAA
GTCCCTGCTGAGCACACCAAGCGCTCTGCCCTGAGCAGAATCAAGGCTCA
GGTTCATCGACCCCTCGTTCAGATGGGTTCAAGTTCGCATCG
FMO09778.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:52:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL3-RH | 1610 | CG4863-RH | 34..1161 | 6..1128 | 5285 | 98.5 | Plus |
| RpL3-RA | 1381 | CG4863-RA | 34..1161 | 6..1128 | 5285 | 98.5 | Plus |
| RpL3-RG | 1688 | CG4863-RG | 708..1468 | 373..1128 | 3450 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:52:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11223856..11224249 | 508..901 | 1875 | 99.5 | Plus |
| 3R | 32079331 | 3R | 11222174..11222367 | 11..204 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 11222561..11222732 | 205..376 | 860 | 100 | Plus |
| 3R | 32079331 | 3R | 11223394..11223530 | 373..509 | 685 | 100 | Plus |
| 3R | 32079331 | 3R | 11224489..11224713 | 898..1118 | 635 | 92.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:52:16 has no hits.
FMO09778.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:36 Download gff for
FMO09778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL3-RA | 30..1168 | 1..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:45:47 Download gff for
FMO09778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL3-RA | 32..1170 | 1..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:42:44 Download gff for
FMO09778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL3-RA | 32..1170 | 1..1138 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:42:44 Download gff for
FMO09778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11222165..11222367 | 1..204 | 97 | -> | Plus |
| 3R | 11222561..11222729 | 205..373 | 100 | -> | Plus |
| 3R | 11223395..11223530 | 374..509 | 100 | -> | Plus |
| 3R | 11223858..11224247 | 510..899 | 99 | -> | Plus |
| 3R | 11224491..11224733 | 900..1138 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:45:47 Download gff for
FMO09778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7047887..7048089 | 1..204 | 97 | -> | Plus |
| arm_3R | 7048283..7048451 | 205..373 | 100 | -> | Plus |
| arm_3R | 7049117..7049252 | 374..509 | 100 | -> | Plus |
| arm_3R | 7050213..7050455 | 900..1138 | 92 | | Plus |
| arm_3R | 7049580..7049969 | 510..899 | 99 | -> | Plus |
