Clone FMO09786 Report

Search the DGRC for FMO09786

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:97
Well:86
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG34232-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09786.5prime Sequence

413 bp (413 high quality bases) assembled on 2010-10-20

> FMO09786.5prime
CAGTCGACATGTTTGGCCCGCTGCAGATTATCGTTTTTGCCACTATCTTG
GTGGCCGTGGCCATGGCCATGCAGCCACTGGAGGACAATGAGCGAACCCA
TCATCTGAACCACAAGCGCCAGTTGTCGCAACAGCACCACCACCACCACC
AAAAGCTCCAGGAGGTGAGGCATTCGGGCCATGATAGTCTGAAACATGGT
GGTTCCCACGTTAAGGAGCATCAAGCGCATCACTCTGAGCGAAAGGCCAG
GCAGAGCCACAAGGAGCCGGGCCACAAGAAGAGTCACCACCAGAAGGAGC
ACCGCCAGCAGCAGGACAACCACACCCGCAAATCCCGATCGCATTCCAAG
GGCAGCAAGCAGCATCACAAGCGGCACACGGGATCGCGTCGCCACGCAAG
CTTTCTAGACCAT

FMO09786.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG34232-RB 831 CG34232-RB 229..615 9..395 1935 100 Plus
CG34232-RC 775 CG34232-RC 190..559 26..395 1850 100 Plus
CG34232-RA 702 CG34232-RA 117..486 26..395 1850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:54:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12165125..12165511 395..9 1935 100 Minus
Blast to na_te.dros performed 2014-11-26 14:54:42
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 696..737 293..334 111 73.8 Plus
gypsy12 10218 gypsy12 GYPSY12 10218bp 8578..8619 293..334 111 73.8 Plus

FMO09786.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:59 Download gff for FMO09786.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34232-RB 189..578 5..395 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:47:02 Download gff for FMO09786.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34232-RB 206..595 5..395 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:53 Download gff for FMO09786.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34232-RB 226..615 5..395 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:53 Download gff for FMO09786.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12165125..12165514 5..395 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:47:02 Download gff for FMO09786.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8052630..8053019 5..395 99   Minus