FMO09795.5prime Sequence
1096 bp (971 high quality bases) assembled on 2010-10-20
> FMO09795.5prime
CAGTCGACATGAGGTGGGAATTTCTGCCATGTTTATTATTGCTCATTTCA
AACAATAAAATCTTTGGTTTTAAAGTACCCAGTATTAATTTTGAAATGCT
AAAGGATGAAGGATTCGAAGTGTCCATACCAGATGAGCCTGGCATACAGC
GGGTGTTCTACATGTTCCAAATTGACGACACCTGCCCGGCTCTAATGGAC
TACATCACGGAGGCAGTGAACGGAAGTTGGGTCTCCAAGCAAAAGATGAG
TCTGCAGAACAACGACAAGCTGCAGATATCAATGCTGGTGCAGTTCAATG
AGGAAATCTTCGAAAAGAGTGAAACCAGGGTGATCATAAACACCCGGCTA
CTGACCACCAAAGACTCTAGCTCGCGAGGCATAACATTCCTTACAGGAGA
GGGCGAGTGCCAGGCATACCTAGCTCCTGCACAGCAAGCCAAACGCTGCA
AGGCCGCCCAAACGATAGTGAGCAATGGACGCCATACTTGCCAGGGTGAA
CTGATCTTTGAGGACAACTTCTCGGAGGCGCAGCTGAACAAGACCACCTG
GAAGCATGACATCCGACAGCGCATGTACCACGTGGAGGAGGAGCTGGTGG
CCTTCGACGATGCCGCACGCAACTGCTTTGTGAAGGAAGGCGAACTCCAT
ATCGTTCCCACTATCGCCACCGAGGTCACCGATGGCAGCTTCAAACTGGG
AGATCGCTGTACGGCCGTCGAAAGTCCGGAACAGGAGTGCAACATTGCGC
ACGGCATCTTCTATAGCATCAAGCCTCCAGTTTTCTCCGCCCAAATTCAC
ACCAGAAACTCTTTCAGTTTCAAATTTGGCAAAATCGTCGTGCGCGCCAA
GTTGCCCAAGGGGGATTGGCTTTTCCCCTATCTGATGCTCCAACCGGTTT
CCACTTACGCGGAGACCCACTATGCCAAGCAATTGAGATTGCATATGCCC
GTGCAATGCCATTTGAGACGAACAGAGATGATATCTCGGAAACACTTATA
TGGCGGCGGTGTGGTTTGCACCCGCATGCAGTACAGTTCTTCAAGACAGA
TAGCACAGCCACTACGGACGACTTCCAACTACCATGATCTGCGAGG
FMO09795.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:54:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GNBP2-RB | 1501 | CG4144-RB | 71..1177 | 8..1091 | 4975 | 97.8 | Plus |
| GNBP2-RA | 1439 | CG4144-RA | 75..1115 | 74..1091 | 4645 | 97.7 | Plus |
| GNBP2-RD | 1341 | CG4144-RD | 36..1017 | 133..1091 | 4350 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:54:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18674545..18674981 | 565..129 | 2185 | 100 | Minus |
| 3L | 28110227 | 3L | 18674169..18674483 | 879..565 | 1575 | 100 | Minus |
| 3L | 28110227 | 3L | 18675215..18675343 | 136..8 | 630 | 99.2 | Minus |
| 3L | 28110227 | 3L | 18674047..18674104 | 937..880 | 290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 14:54:38 has no hits.
FMO09795.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:01:58 Download gff for
FMO09795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GNBP2-RB | 78..1179 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:47:00 Download gff for
FMO09795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GNBP2-RB | 78..1179 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:43:51 Download gff for
FMO09795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GNBP2-RB | 65..1166 | 1..1082 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:43:51 Download gff for
FMO09795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18674048..18674104 | 880..936 | 100 | <- | Minus |
| 3L | 18674169..18674482 | 566..879 | 100 | <- | Minus |
| 3L | 18674545..18674977 | 133..565 | 100 | <- | Minus |
| 3L | 18675219..18675349 | 1..132 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:47:00 Download gff for
FMO09795.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18667148..18667204 | 880..936 | 100 | <- | Minus |
| arm_3L | 18667269..18667582 | 566..879 | 100 | <- | Minus |
| arm_3L | 18667645..18668077 | 133..565 | 100 | <- | Minus |
| arm_3L | 18668319..18668449 | 1..132 | 97 | | Minus |
