FMO09801.5prime Sequence
1088 bp (614 high quality bases) assembled on 2010-10-27
> FMO09801.5prime
CAGTCGACATGAGTTTTATTTTTAAATTTATTGCCTCTTTTGTACGCAAA
ATGCTGGATCTGTTGCAATTTGGAGGGAAAACCCTTACGCACACGCTGAG
TATTTATGTAAAAACGAACACGGGCAAAACGCTGACCGTTAATCTGGAGC
CCCAGTGGGATATTAAAAACGTAAAGGAACTGGTGGCACCACAATTGGGA
CTTCAGCCGGATGATCTAAAGATCATATTTGCCGGTAAGGAACTAAGCGA
TGCCACGACAATAGAGCAATGTGACTTGGGTCAGCAAAGCGTTTTGCATG
CCATTCGTTTGCGACCGCCCGTGCAGCGCCAGAAAATCCAGTCGGCCACT
TTGGAGGAGGAGGAACCTTCGCTTATCGATGAAGCCTCCAAGCCTCTAAA
TGAAACTCTGTTGGACTTGCAGCTGGAAAGCGAGGAGCGTCTGAATATAA
CCGATGAAGAAAGAGTCCGTGCCAAAGCGCATTTCTTTGTACATTGCAGC
CAATGCGATAAGCTGTGTAATGGCAAACTTCGGGTCCGCTGCGCTTTATG
CAAGGGCGGCGCCTTTACTGTCCATCGTGATCCGGAGTGTTGGGATGATG
TCTTGAAGTCGCGTAGAATTCCCGGTCATTGTGAAAGTCTGGAGGTGGCC
TGCGTGGACAACGCGGCTGGCGATCCGCCCTTCGCTGAATTCTTCTTCAA
GTGTGCTGAGCATGTCTCCGGCGGGGAGAAGGATTTTGCGGCTCCATTGA
ATCTAATCAAGAATAACATCAAGAATGTTCCTTGCCTGGCCTGCACGGAT
GTGAGTGATACCGTGTTGGTTTTCCCCTGCGCATCGCACACGTCACCTGT
ATCGACTGCTTCCGCCATTATTGCCGTTCCCGTTTGGGCGATCGTCAGTT
TATGCCGCATCCGGACTTCAGCTACACTTTGCCATGACCCTTCACGCTGC
GAGCACTCGATTCATCGAGGATATTCCATCACTTCCAGCTGCTGACCCGC
GAGGAGTACTGATCGGTACCGAGATTCGTCATCTAGGAGTATGTCCTACT
AGCAGGTGGAGTAACTCTGACCCCAGCAAGAATGCGGC
FMO09801.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:06:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| park-RC | 1609 | CG10523-RC | 68..1144 | 9..1088 | 4905 | 97.3 | Plus |
| park-RB | 1630 | CG10523-RB | 89..1165 | 9..1088 | 4905 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:06:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21195772..21196119 | 805..458 | 1740 | 100 | Minus |
| 3L | 28110227 | 3L | 21196445..21196702 | 266..9 | 1260 | 99.2 | Minus |
| 3L | 28110227 | 3L | 21196193..21196387 | 459..265 | 960 | 99.5 | Minus |
| 3L | 28110227 | 3L | 21195351..21195632 | 1088..804 | 800 | 90.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:06:48 has no hits.
FMO09801.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:49 Download gff for
FMO09801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| park-RC | 63..1139 | 9..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:53:11 Download gff for
FMO09801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| park-RB | 89..1165 | 9..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:30 Download gff for
FMO09801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| park-RB | 89..1165 | 9..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:30 Download gff for
FMO09801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21195772..21196117 | 460..805 | 100 | <- | Minus |
| 3L | 21196193..21196385 | 267..459 | 99 | <- | Minus |
| 3L | 21196445..21196702 | 9..266 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:53:11 Download gff for
FMO09801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21188872..21189217 | 460..805 | 100 | <- | Minus |
| arm_3L | 21189293..21189485 | 267..459 | 99 | <- | Minus |
| arm_3L | 21189545..21189802 | 9..266 | 99 | | Minus |
