FMO09802.5prime Sequence
1161 bp (1031 high quality bases) assembled on 2010-10-27
> FMO09802.5prime
CAGTCGACATGGTGCTACCATTATTGCAACGCTCCACGCTTCGCGGCGTT
CAACAAATGACGAAACCCTGGGCCGCCATTGGAAGTTTGCGTCTGGCCTC
CCAGGAGTTTCGCGTGGAGAGCGACACCTTTGGCGAACTGAAGGTGCCCG
CGGATAAGTACTATGGCGCCCAAACGATGCGATCCCAGATCAATTTCCCC
ATCGGCGGAGCCACCGAACGGATGCCCAAACCCGTGGTCCAGGCCATGGG
CATCCTGAAGAAGGCCGCCGCCGAGGTGAACAAGGAGTTCGGACTGGACA
GCAAGGTTAGCGAGGCGATCTCGAAGGCGGCCGACGATGTGATCTCTGGC
AAGCTATACGACGACCACTTCCCGCTGGTCATCTGGCAGACGGGCTCGGG
CACGCAGAGCAACATGAATGTGAATGAGGTGATCAGCAATCGTGCCATTG
AGCTGCTGGGCGGCAAACTGGGCTCCAAGACGCCCGTGCATCCCAACGAT
CATGTGAACAAATCGCAGAGCTCCAACGATACCTTCCCCACCGCCATTCA
CATCTCGGTGGCGCTGGAGCTGAACAACAACCTTAAGCCGGCGATTAAGA
CGCTGCACGATGCGCTGCGTGCCAAGTCGGAGGAGTTCAAGGACATTATC
AAGATCGGACGCACGCATACGATGGATGCGGTGCCATTGACGCTGGGCCA
AGAGTTCAGCGGCTATGCCCAGCAATTGGCCTACGCCCAGGAGCGCATCG
ATGCCTGTCTGCCGCGCGTCTATGAGCTGGCTCTGGGCGGCACTGCTGTG
GGTACGGGTCTGAACACACGCAAGGGATTCGCCGAGAAGTGCGCTGCAAA
GATCGCCGAGCTGACCAGCCTGCCCTTCGTTACCGCGCCCAACAAGTTCG
AGGCACTGGCTGCCCGCGATGCCATGGTGGAGGTGCATGGTGTGCTCAAC
ACGATCGCCGTTAGCCTGATGAAGATTGCCAACGATATTCGTTTCCTTGG
CTCCGGACCGCGTTGCCGGTTTGGGTGGAGCTCCTCGCCTACCGGAGAAC
GAGCCAGTAGCCTCCCTCATGCCCGGCAAGGTGAATCCCACGCAATGCGA
GTCGCTGAAATGCTCCTCCGGCCCAGGTGATGGCATCAGGGGCGGGACAT
CGTGAATCATG
FMO09802.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:06:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(1)G0255-RA | 1740 | CG4094-RA | 107..1226 | 9..1133 | 5395 | 99.1 | Plus |
| l(1)G0255-RB | 1668 | CG4094-RB | 120..1154 | 94..1133 | 4970 | 99 | Plus |
| CG4095-RA | 1647 | CG4095-RA | 191..1184 | 106..1100 | 1960 | 81.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6680566..6681243 | 427..1108 | 3135 | 98.7 | Plus |
| X | 23542271 | X | 6682504..6683173 | 427..1100 | 1515 | 82.3 | Plus |
| 3L | 28110227 | 3L | 11464219..11465081 | 1101..238 | 1075 | 76 | Minus |
| X | 23542271 | X | 6680298..6680501 | 228..431 | 1020 | 100 | Plus |
| X | 23542271 | X | 6679825..6679957 | 95..227 | 665 | 100 | Plus |
| X | 23542271 | X | 6678530..6678617 | 9..96 | 440 | 100 | Plus |
| X | 23542271 | X | 6682225..6682412 | 234..418 | 230 | 76.1 | Plus |
| 2L | 23513712 | 2L | 10190312..10190497 | 1101..912 | 225 | 75.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:06:52 has no hits.
FMO09802.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:49 Download gff for
FMO09802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0255-RA | 58..1208 | 1..1152 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:53:13 Download gff for
FMO09802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0255-RA | 100..1250 | 1..1152 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:32 Download gff for
FMO09802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(1)G0255-RA | 100..1250 | 1..1152 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:32 Download gff for
FMO09802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6678523..6678616 | 1..95 | 96 | -> | Plus |
| X | 6679826..6679957 | 96..227 | 100 | -> | Plus |
| X | 6680298..6680498 | 228..428 | 100 | -> | Plus |
| X | 6680568..6681291 | 429..1152 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:53:13 Download gff for
FMO09802.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6572556..6572649 | 1..95 | 96 | -> | Plus |
| arm_X | 6573859..6573990 | 96..227 | 100 | -> | Plus |
| arm_X | 6574331..6574531 | 228..428 | 100 | -> | Plus |
| arm_X | 6574601..6575324 | 429..1152 | 97 | | Plus |
