FMO09813.5prime Sequence
1118 bp (978 high quality bases) assembled on 2010-10-27
> FMO09813.5prime
CAGTCGACATGGCCCACACCCGCCGTCCCAGCGACGGCCTGCTGGCCCGC
GTGAACTTCCCGCTGTACGCCGTGGACATGCTAACCAGCCGCCACATTCT
GGTAGCCGGAGGCGGTGGCTCCAGCAAAACGGGAGTGGCGAACGGCTTTG
AGATCTATGAGCTGTACCACAACGGCAGCCACTTCTGCGCGGAGGAGGTT
TTGCGCCATGAGACCGGCGCCAATGTGGTGATGAACTTCGCGGTGCGCAA
TGGCGGCCGGAGGGGCTATCTGTGCGCCGGCCAGGAGGCGCACTGTCAGA
TGTACTACGTCCAGCCGCGCGTTCAATCCGAAGAGGATGGGAATGGAAAC
GGTGTGGGCGTCGGGGACGGCAAGCCTGCTCCGGAGGAACGGCCGCACGA
GAACGGCAACGTGCGCCAGCGAAACGCACACTCGGGCGTGGAGCCAGTGG
CCAACGGGCACAGGCCACCCCTTTCCACCGCCGACATATTGCGTCAGTTT
CGGCGACTGCATTTCGACATCCAGGCGGCGGATGTGATCCAGACGGACTT
CCTCAAGGGCGCCGAGCCCCTGCAGCGCGTGGTGCGCATCAGCGGTAATG
GCCGTCTGATGGCCACTGGCGGCACGGACGGAAAACTGCGCGTCTGGACG
TTCCCCCAGATGACGCTGGCCGCCGAGCTGGCGGCACACAGCAAGGAGAT
CGATGACCTGGACTTCAGTCCCGACAGCAAGCTAATTGCCAGCATCTCCA
AGGATGCACAGGGCTTGGTGTGGGACCTGGCCAGCGGCCAGCTGCAACAC
AAGCTGCAGTGGAAAACGCCCGAGGGGGCCAAGTACCTGTTCAAACGGTG
CCGCTACCGGAACCGTGGAAGCGCAAAAGGATAACTACCGCCTCTTTACC
ATTGCCATCCGCTGGGCACGTTGGGAAAGCATCGTGCTTCCTGCAGCACT
GGGACTGTGCCAGCGGGCACTGCGTCAAGCTGTGGACATTGACGAAAGCC
TCTCGTCACTGGCAGTGCGGGATGATGGTTCGATTCATGTCGTCGGCACC
GATGTTTCTCAAGGCAGCGTATTCCATGTACATGCAATCAGATCTGCACG
CGTGCTCAATTCCCAATG
FMO09813.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:04:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9175-RB | 1983 | CG9175-RB | 176..1273 | 9..1107 | 5065 | 98 | Plus |
| CG9175-RA | 2078 | CG9175-RA | 271..1368 | 9..1107 | 5065 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:04:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6097610..6098491 | 1029..150 | 4125 | 98.9 | Minus |
| 2L | 23513712 | 2L | 6098555..6098696 | 150..9 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:04:29 has no hits.
FMO09813.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:26 Download gff for
FMO09813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9175-RB | 174..1284 | 9..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:52:02 Download gff for
FMO09813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9175-RA | 271..1381 | 9..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:28 Download gff for
FMO09813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9175-RA | 271..1381 | 9..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:28 Download gff for
FMO09813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6097552..6098491 | 150..1091 | 97 | <- | Minus |
| 2L | 6098556..6098696 | 9..149 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:52:02 Download gff for
FMO09813.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6097552..6098491 | 150..1091 | 97 | <- | Minus |
| arm_2L | 6098556..6098696 | 9..149 | 100 | | Minus |
