FMO09814.5prime Sequence
1101 bp (1007 high quality bases) assembled on 2010-10-27
> FMO09814.5prime
CAGTCGACATGGTCACCTGCGGCCGGCAAACGTTCAACATGCTGCCCATG
GCGCCGACGAGTCCTTTTGTGAGCAGCAGCTCCTCGGTGGCCGCATCCTC
GACTTCCGTTTCCGCCAGCAGTACCGTTTCCGCCTCCGCGAGCAGCAAGC
CCAAGCTGGCCTTCAGCATCGACTCGATTGTGGGCGAATCCTCGACGAGA
TCGGCTCCACTAAGGGTCAGTGTGATATCTTCGCCGCCGCCGCGCAGCGA
AAGTCCCGCTTCGCCAACGAACACGAACAACAGTGGGCGCCGGACGCCCA
GGGGCTATATCTACTGCCGCAGAAGGGATTCGCTGGATCGATCGCGCAGT
CCTCAGAGATCACCGGTTAGCCGGTCGCCATCGCCCCCCAATGCAGGAGG
CAATCCGGCAGCGGCCGGGAATACTGCAAAGTCCGGGGATCCATCGTCGG
GAACGGGAAATCCTCCAACCCTCATCCGTCCGTTGCCTCTGCCGGCGCCA
AATCTAGCTTTAATTGGGAACCGCACCTCACCGAACGCCATGGCGGTGCG
CATGGCGGGTCCGCCCCACCCGCCGTCGCAGCCACCGCCGTTCCTTGCCG
CCCAGTTCCAAATGGCTGCTGCACTGGCTCATCATCACCAGCAGCAACAG
CAGCAGCAACAACAGCAACTTCCGCCCGTGCCAACTGGACCGCCACATGG
TCCACATCCGCATCTGCCGCCCGGCCAAATTCCACTTGGAATCTTTCCCG
GCGGACCGCATCCCGGGCATCCTCCGCCCCACGGACACCATCCGTTCGGG
AGTGCGCCGCATCTGATCCGGGATAGCTATCCGTTGTATCCATGGTTGCT
CAGCCGACACGGACGCATTTTTCCACGATTCCCAGGCAATTTCCTGTTCC
AGCCATTCCGCAAGCCAAAGCGGGTGCGCACCGCCTTCTCGCCGACGCAG
CTACTCAAGCTGGAGCACGCCTTCGAGGGGACCACTACGTGGTGGGGGCG
GGAGCGGAGCAGTGGCCCAGGACTCAGCCTGACCGAAACGCAAGTAGTTG
TCGACGACGCACCAGCCAGCGAATGCACAGAGGCGGCAATGCAGCGAACC
A
FMO09814.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E5-RA | 2122 | CG9930-RA | 395..1431 | 9..1042 | 5065 | 99.5 | Plus |
| ems-RA | 2478 | CG2988-RA | 1390..1573 | 820..999 | 345 | 79.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13873300..13874179 | 888..9 | 4400 | 100 | Minus |
| 3R | 32079331 | 3R | 13868600..13868756 | 1042..889 | 560 | 94.9 | Minus |
| 3R | 32079331 | 3R | 13903605..13903715 | 890..999 | 220 | 82 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:04:33 has no hits.
FMO09814.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:27 Download gff for
FMO09814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E5-RA | 1..1041 | 9..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:52:04 Download gff for
FMO09814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E5-RA | 395..1435 | 9..1049 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:30 Download gff for
FMO09814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E5-RA | 395..1435 | 9..1049 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:30 Download gff for
FMO09814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13868599..13868756 | 889..1044 | 96 | <- | Minus |
| 3R | 13873300..13874179 | 9..888 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:52:04 Download gff for
FMO09814.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9694321..9694478 | 889..1044 | 96 | <- | Minus |
| arm_3R | 9699022..9699901 | 9..888 | 100 | | Minus |
