Clone FMO09818 Report

Search the DGRC for FMO09818

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:98
Well:18
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG34232-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09818.5prime Sequence

407 bp (407 high quality bases) assembled on 2010-10-27

> FMO09818.5prime
CAGTCGACATGTTGAAGGCGATTATCGTTTTTGCCACTATCTTGGTGGCC
GTGGCCATGGCCATGCAGCCACTGGAGGACAATGAGCGAACCCATCATCT
GAACCACAAGCGCCAGTTGTCGCAACAGCACCACCACCACCACCAAAAGC
TCCAGGAGGTGAGGCATTCGGGCCATGATAGTCTGAAACATGGTGGTTCC
CACGTTAAGGAGCATCAAGCGCATCACTCTGAGCGAAAGGCCAGGCAGAG
CCACAAGGAGCCGGGCCACAAGAAGAGTCACCACCAGAAGGAGCACCGCC
AGCAGCAGGACAACCACACCCGCAAATCCCGATCGCATTCCAAGGGCAGC
AAGCAGCATCACAAGCGGCACACGGGATCGCGTCGCCACGCAAGCTTTCT
AGACCAT

FMO09818.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG34232-RC 775 CG34232-RC 178..559 8..389 1910 100 Plus
CG34232-RA 702 CG34232-RA 105..486 8..389 1910 100 Plus
CG34232-RB 831 CG34232-RB 246..615 20..389 1850 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12165125..12165494 389..20 1850 100 Minus
Blast to na_te.dros performed 2014-11-26 15:04:46
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy12 10218 gypsy12 GYPSY12 10218bp 696..737 287..328 111 73.8 Plus
gypsy12 10218 gypsy12 GYPSY12 10218bp 8578..8619 287..328 111 73.8 Plus

FMO09818.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:29 Download gff for FMO09818.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34232-RA 78..466 1..389 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:52:13 Download gff for FMO09818.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34232-RA 78..466 1..389 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:37 Download gff for FMO09818.5prime
Subject Subject Range Query Range Percent Splice Strand
CG34232-RA 98..486 1..389 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:37 Download gff for FMO09818.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12165125..12165493 21..389 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:52:13 Download gff for FMO09818.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8052630..8052998 21..389 100 <- Minus