FMO09821.5prime Sequence
904 bp (904 high quality bases) assembled on 2010-10-27
> FMO09821.5prime
CAGTCGACATGTCATCGCACGGCCTTGCTTACACAACAAGAATTGAAAGA
AAGTCTTATAGAGAACTACAAATCAATAGAGATCAATACTTTGTAACTGC
GCCAAATGAAGAAGATTTGGTTATGAGTTTATCTCCAAAGGACACACTTA
TACATACTGCCATTTCCCAGCACCATCAAGTGGATACTTCTACTAAATTA
AATACAAACGAAACATCGACACAAAATACCGTATCTACAGCAGCCGCGGC
AGCGGTTGCACATCACCACCACAACCTTTCTAGTATTCACCACCTCCAAA
ACCTGCATAGTCAGCATCAAAGTACTTTATTTAATAGTAATCACTCAACA
CCCTTTAGCGTGACCGATATCTTAAGTCCAATTGAAGAATCGTATCGCAA
ACTGGAACTGAACGGAAATCCACCATCTCCGTTTCGATCAAACTCTAGTA
GCAGCAGTATTAATTCTCCTGGAACATTAACTACATCAACTATGGCGAAT
CCGTACGCTATGGGAACCTTATATCACAGCCCAGGTGTACAGACCTATTG
CGGACCTACCGATAACCTATCTCTGGCTGGTCACTACACTGACATGAGAA
ATTCTGCATCGTGGTACGGATCAACAGCTAACGACCCAAGATTTGCAATT
TCACGCCTAATGAGTTCATCAGCCAGTGGAACAATGAGTCATATGGGAAA
CATGAGTGGACTAGCAGCTTGCAGTGTAAGCGATTCAAAACCGCTACAGT
TTCCTTTAGCACAAAGAAGAAAGCGAAGAGTTTTGTTTACGCAAGCCCAG
GTTGGTACTTACATCCTTAGTTTGCTACTTAAAAAAAAACACAAATATTT
ACCGAATGGAACGAAGTCAACTTGCTACAGGCAAAAGCAAGCTTTCTAGA
CCAT
FMO09821.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:04:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scro-RB | 1246 | CG17594-RB | 310..1189 | 8..886 | 4360 | 99.8 | Plus |
| scro-RC | 1874 | CG17594-RC | 310..1104 | 8..802 | 3975 | 100 | Plus |
| scro-RA | 1961 | CG17594-RA | 310..1104 | 8..802 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:04:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 24725864..24726292 | 8..436 | 2145 | 100 | Plus |
| 3L | 28110227 | 3L | 24734036..24734274 | 649..886 | 1130 | 99.2 | Plus |
| 3L | 28110227 | 3L | 24728296..24728508 | 436..648 | 1065 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:04:55 has no hits.
FMO09821.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:31 Download gff for
FMO09821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scro-RB | 122..1010 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:52:17 Download gff for
FMO09821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scro-RB | 306..1194 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:42 Download gff for
FMO09821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scro-RB | 306..1194 | 1..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:42 Download gff for
FMO09821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 24725860..24726292 | 1..436 | 99 | -> | Plus |
| 3L | 24728297..24728508 | 437..648 | 100 | -> | Plus |
| 3L | 24734036..24734279 | 649..891 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:52:17 Download gff for
FMO09821.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3LHet | 211629..211840 | 437..648 | 100 | -> | Plus |
| 3LHet | 217368..217611 | 649..891 | 98 | | Plus |
| 3LHet | 209192..209624 | 1..436 | 99 | -> | Plus |
