FMO09825.5prime Sequence
1102 bp (976 high quality bases) assembled on 2010-10-27
> FMO09825.5prime
CAGTCGACATGGTGCACGACAATCCAATTCTCTGGGACTCCCGTCTCCCG
AATTTCAAGGGCGCCGAAGAAGAAAAGAACCGAGCCTGGGAGCACATAGG
CCGCGAGTTCAACGCTCCCGGGCGTCGCGTTGCACGGGCCTTCAAGTCCT
TGAGGGAATCCTACCGCCGTGAACTCGCCCACGTCAAGCTAATGGGCAAT
GGCTTCAAGCCCAAGTGGAGTCTCTATGAGGCCATGGATTTCCTGCGCGA
TGTCATCAGAGAACGAAAGGGCGCTTCGCATGCAACCGATCTAAGCCTGA
CAACCTATGGCCATATTAACAATAACAACAACAACAACAACAACAGTAAC
AGCTTGGCTGCAGGGGGAAAGGCAATGACCCTGAAGCTGTCCAATTCCTT
TAACGAGTCCGCCTCAGTGTTAAATCTCTCAAAGTGCTCCTCGCTCAATG
TAAGCGACGATCACTACTATTGCGACTACTATGTGAAGCCGGAGCTGGAT
CTCTCGGTGGGCGGTGGGGCCGGAAGTAGCACAAGTGGGAGTAGCTCCGG
CGGCGGGCCACTTCCTCTGCCCGCTCACCAGGCTCACAACGACAGTCGGG
TGAGCTCAACGAGAAACGAGCAAAGGGCACAGCATCACAGCTATGAAGAC
ATGGACGACAGCTCGATACGCAGCGGGGACGAAGATATCGCCCACGCATC
CGACGTAGTGGAGGAGTTGGATGCCATCGATGCAGATTTCCCTTATCCTC
TGATTCTGGATTCCAACTCACGCGGTAGCCCCAATGTTGGTGTGGACGAT
GTGGTCATGTCCCGCAAGCTTCGCCGTAACGTCGATCAAGATGTTTTGGA
GGAAGGAAACGGTCACGGCGATGCGGTTATCGATGGTGACGACTACGACG
AACAAATGCTGCAACAGCACCGCCATCTCCAGGTAGCAACAGGGCGTCGC
AAGCCGGAGGGTTGGATCTGCCGCCCCCACAAACTGTACGTGAGGATTTG
AACTTCTAAGTTCTGCGGCTTTATTCAGCCAGCTTATTATGCATGGGAGG
ACTCGGACGCCGACATTATGAATCGCATCTTTCTCTACTGATCAGTGCGC
AT
FMO09825.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:05:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mes2-RC | 2208 | CG11100-RC | 232..1309 | 9..1086 | 5025 | 98.2 | Plus |
| Mes2-RB | 2302 | CG11100-RB | 326..1403 | 9..1086 | 5025 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:05:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22950532..22951285 | 269..1025 | 3575 | 99.1 | Plus |
| 3L | 28110227 | 3L | 22946311..22946571 | 9..269 | 1305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:05:09 has no hits.
FMO09825.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:33 Download gff for
FMO09825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mes2-RC | 225..1305 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:52:22 Download gff for
FMO09825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mes2-RB | 319..1399 | 1..1081 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:48 Download gff for
FMO09825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mes2-RB | 319..1399 | 1..1081 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:48 Download gff for
FMO09825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22946304..22946570 | 1..268 | 98 | -> | Plus |
| 3L | 22950532..22951345 | 269..1081 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:52:22 Download gff for
FMO09825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22939404..22939670 | 1..268 | 98 | -> | Plus |
| arm_3L | 22943632..22944445 | 269..1081 | 97 | | Plus |
