FMO09826.5prime Sequence
896 bp (896 high quality bases) assembled on 2010-10-27
> FMO09826.5prime
CAGTCGACATGATGACGCCCATGTGGATATCGCTGTTCAAAGTCCTGCTG
CTGCTGTTCGCCTTCTTTGCCACGATAGTTTATATCAATATCGAATTAAC
GAAGCGACACGAGGCCGAGGTGAGGGCAGAGAAAACAGTGGCAGACTATA
AGGCCCTTTTGGCTACCATTAACAATGGCGGACCCGGAAAGTCAGCATCT
AATCACTTACAGTACGAGGCCAAGGAGTATGAACGTATCATCAAAGAGCT
TTTTACAATAACCAATGATGAGGGAGTTGTCCTCTTTAATAGGACGGACA
CGGAGGTGCAATCCGAACAGCCGATACCCCCCCGACATCCATCGGATACC
AAGTATCGGCCACCACAATCCCCAGCTCGTCCTTTGAGGAATGACACTAA
GGAGCACAATCCCTGCGCCAAGGATGAAAGCCAACACCTTATAAACTTCT
GCACGAATGTGGACGACTATCCGGACCTTTCAGGCCTCACACATAAGCTA
AAAAACAACTTCGCCAAGTTCTTTAGCAACGATCTTCAGCCCACGGATGT
GAGCTCTCGCGTTGGTGGCTCAGATGAGCGATTCCTTTGCAGGAGCATCA
GGAAGCTGGTGTACCCAAAAAAGGGCTTGAGGGCGGACGACACCTGGCAG
TTAATTGTCAATAACGATGAGTACAAACAGGCCATCCAGATCGAAGAGTG
CGAAGGAGCGGATCAACCCTGTGACTTTGCCGCCAACTTTCCGCAGAGCT
ATAATCCAATCTGCAAGCAGCACTACACACAGCAGACCCTGGCCAGCATC
AAGAGTGATGGCGAACTGGACGTGGTGCAGAATTCCTTCAAGATCCCCTC
CTGCTGCAAGTGCGCGTTGAAGACTGGGGCAAGCTTTCTAGACCAT
FMO09826.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:05:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spz-RK | 2118 | CG6134-RK | 861..1731 | 8..878 | 4250 | 99.2 | Plus |
| spz-RJ | 1882 | CG6134-RJ | 927..1593 | 212..878 | 3230 | 99 | Plus |
| spz-RL | 2058 | CG6134-RL | 1077..1671 | 284..878 | 2840 | 98.5 | Plus |
| spz-RJ | 1882 | CG6134-RJ | 861..927 | 8..74 | 335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:05:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27066099..27066453 | 703..349 | 1715 | 98.9 | Minus |
| 3R | 32079331 | 3R | 27065857..27066031 | 878..704 | 830 | 98.3 | Minus |
| 3R | 32079331 | 3R | 27067358..27067496 | 212..74 | 695 | 100 | Minus |
| 3R | 32079331 | 3R | 27067122..27067204 | 290..208 | 415 | 100 | Minus |
| 3R | 32079331 | 3R | 27069144..27069210 | 74..8 | 335 | 100 | Minus |
| 3R | 32079331 | 3R | 27066601..27066665 | 355..291 | 295 | 96.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:05:13 has no hits.
FMO09826.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:34 Download gff for
FMO09826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz-RK | 849..1736 | 1..885 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:52:23 Download gff for
FMO09826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz-RK | 851..1738 | 1..885 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:50 Download gff for
FMO09826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spz-RK | 851..1738 | 1..885 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:50 Download gff for
FMO09826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27065850..27066031 | 704..885 | 96 | <- | Minus |
| 3R | 27066099..27066453 | 349..703 | 98 | <- | Minus |
| 3R | 27066608..27066665 | 291..348 | 100 | <- | Minus |
| 3R | 27067122..27067199 | 213..290 | 100 | <- | Minus |
| 3R | 27067358..27067495 | 75..212 | 100 | <- | Minus |
| 3R | 27069144..27069216 | 1..74 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:52:23 Download gff for
FMO09826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22891572..22891753 | 704..885 | 96 | <- | Minus |
| arm_3R | 22891821..22892175 | 349..703 | 98 | <- | Minus |
| arm_3R | 22892330..22892387 | 291..348 | 100 | <- | Minus |
| arm_3R | 22892844..22892921 | 213..290 | 100 | <- | Minus |
| arm_3R | 22893080..22893217 | 75..212 | 100 | <- | Minus |
| arm_3R | 22894866..22894938 | 1..74 | 96 | | Minus |
