FMO09827.5prime Sequence
1177 bp (1049 high quality bases) assembled on 2010-10-27
> FMO09827.5prime
CAGTCGACATGGACTGCTGCCTATCGGACCAGGCTTGTGAGGAAAGGCGT
ATCAGCAGGGAAATTGATAAGTTCCTGAAAGCGGAAAAGAAGAAAGCTCG
ACGTGAACTTAAGCTATTGGTCCTGGGCACAGGTGAATCGGGCAAGACCA
CATTCATCAAACAAATGCGCATCATTCACGGCAAAGGATTTTTGGACAAG
GAGAGGAAGCAGTTCACCAAAAATGTTTTCCAAAACATATTCATGGCCAT
ACAGTCGATGATCAGTGCAATGGATACTCTGCGAATTCCCTACGGTCAGC
AGGAGCATAGTAAACTTGCCGATCTGGTGAAGAGCATCGATTACAAGACA
GTTACCAGACTGGAGGCGCCCTACTTGAATGCCATCAAAACTCTTTGGAA
AGATGCTGGCATCAAGGAGTGCTACAATCGTCGTAGGGAATATCAGCTGA
CTGATTCAACTGAATACTTTTTGAATGACATAGCGCGAATTGAACGGAGT
GATTACCAGGCCACTGATCAGGACATTCTTCATGTTCGAGCGCCAACAAC
CAATATTGTTGAGTATCCCTTCAATTTGGACGGTTTTCTGATAAGATTGG
TGGACGTCGCTGGTCAGCGAACGGAGAGAAGAAAGTGGATTCATTGTTTT
TCCAATGTGACATCAATTATGTTTTTGGTTGCCATGTCCGAGTTTGATCT
ATCCTTGGCTGAATCGGAGAATGATAATCGTATGAAGGAATCTAAAGCTT
TATTTCACAATATAATATCGTTTTCATGGTTTCAACACTCGTCCGTTATT
CTGTTTCTAAACAAGGAGGATTTATTTAAAAAGAAAATATTGTCAACGCA
TTTGGCAGACTATTTTCCTGATATAATGGTCCAAAGAAGGATGCTAAGCG
GCCCGAGAATTCATATTGTACATGTTTACTAGCGTGCATCCTGATCCTTA
CAAGTGCATCTATCCTCATTTCACCGTTGCTACAAATACTGAAAATATAA
GTCCTGGTTCACTGCTGTCACGACACAATTCTGGAATTGCATTAAGTGAA
CTATTGCTGGCAGCTTTCTAGAACATTCGTCTGGCGCGGCCCAGTAGTGT
CATATCTAATCTATCTATCTATTCCAACTAGCCCTAGAATCTGTCTAGAC
TGCTTGATTCCACATACATAACGCCCG
FMO09827.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:05:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17760-RB | 1535 | CG17760-RB | 375..1422 | 8..1050 | 5040 | 99 | Plus |
| Galphaq-RD | 1615 | CG17759-RD | 548..1318 | 123..892 | 1385 | 78.7 | Plus |
| CG30054-RE | 1062 | CG30054-RE | 93..904 | 101..910 | 1205 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:05:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12626983..12627168 | 126..311 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 12627237..12627391 | 312..466 | 775 | 100 | Plus |
| 2R | 25286936 | 2R | 12627971..12628116 | 726..871 | 730 | 100 | Plus |
| 2R | 25286936 | 2R | 12627785..12627916 | 594..725 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 12627598..12627726 | 467..595 | 645 | 100 | Plus |
| 2R | 25286936 | 2R | 12626798..12626917 | 8..127 | 600 | 100 | Plus |
| 2R | 25286936 | 2R | 12624150..12624303 | 313..466 | 500 | 88.3 | Plus |
| 2R | 25286936 | 2R | 12628193..12628301 | 878..985 | 480 | 98.2 | Plus |
| 2R | 25286936 | 2R | 12616788..12616933 | 313..458 | 460 | 87.7 | Plus |
| 2R | 25286936 | 2R | 12617793..12617923 | 594..724 | 295 | 81.7 | Plus |
| 2R | 25286936 | 2R | 12617987..12618132 | 726..871 | 280 | 79.5 | Plus |
| 2R | 25286936 | 2R | 12624565..12624645 | 598..678 | 225 | 85.2 | Plus |
| 2R | 25286936 | 2R | 12623919..12624086 | 144..311 | 210 | 75 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:05:19 has no hits.
FMO09827.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:35 Download gff for
FMO09827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17760-RB | 350..1409 | 8..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:52:25 Download gff for
FMO09827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17760-RB | 375..1434 | 8..1059 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:51 Download gff for
FMO09827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17760-RB | 375..1434 | 8..1059 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:51 Download gff for
FMO09827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12627598..12627726 | 467..595 | 100 | -> | Plus |
| 2R | 12627787..12627916 | 596..725 | 100 | -> | Plus |
| 2R | 12627971..12628124 | 726..878 | 99 | -> | Plus |
| 2R | 12628194..12628301 | 879..985 | 98 | -> | Plus |
| 2R | 12626798..12626916 | 8..126 | 100 | -> | Plus |
| 2R | 12626984..12627168 | 127..311 | 100 | -> | Plus |
| 2R | 12627237..12627391 | 312..466 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:52:25 Download gff for
FMO09827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8515103..8515231 | 467..595 | 100 | -> | Plus |
| arm_2R | 8515292..8515421 | 596..725 | 100 | -> | Plus |
| arm_2R | 8515476..8515629 | 726..878 | 99 | -> | Plus |
| arm_2R | 8515699..8515806 | 879..985 | 98 | -> | Plus |
| arm_2R | 8514303..8514421 | 8..126 | 100 | -> | Plus |
| arm_2R | 8514489..8514673 | 127..311 | 100 | -> | Plus |
| arm_2R | 8514742..8514896 | 312..466 | 100 | -> | Plus |
