FMO09829.5prime Sequence
1137 bp (1040 high quality bases) assembled on 2010-10-27
> FMO09829.5prime
CAGTCGACATGGCCTTTTCCCGCCACAACATCGAGAAGCGCCGACTCATC
GAGCTCGTGCGACTCAACCCAATCCTCTGGGACTGCCGCCTGCCACACTA
CAAGCGTTCGGACAAGCGAAAAGCCATCAAATGGAACGAGTTGGGGCGGC
TCTTCAACGTTAATGGCGAGCGGGTGCAGCGCACGTTTACTTCGCTCCGC
GAGATCTTCCGCCGCGAACTGAACCACGAAAAGATGCTGGGCACCACGCG
CTTCAAGTCCAAGTGGGAATACTACGATGCCATGGCCTTCCTCAAGGAGG
TCATTCGGGAACGCAAATCTCGCGAGCGCATCAAGCACGGCTCTTTGGAT
TCAGCACCAGTAGCCACAGGCAGCAGCAACAATAACAACAACTGCGTAAG
CCGCAATAGCAGCAACAACAACAGCAGCAGTGCGGCCCTAGACGAATATC
AGTACTTTGCTCCTAGCGACCCCAACAACCCGAACAATCAGCCCCAGCTG
CAGCCCGAACCAAAGAGTAGTCTGCCAGTGACTATTCCCAGTCTAAGTCT
CACCCTCAGCCAGTTGCCGGTGGCTCTGCAGCAGCAGGCCCAGCATCTCC
AAGCCTTACAGTTGCAACCGGACGTGACGCTGACTTCCCTGCAGAAACAA
TCTTTACCCACTTCCCTTACCAATGCCACACCCGCGCCCTTAGCACAAAC
CTCGCCCGCCCAGGTGCTGTCCAGCTCGCGCTCATGCAGCTCTTCGCCCT
CCATCTATATAAAGGACGAGCCGTGTTCTCCGGCAGGGGGTTGTCCGGAA
GAAGTGATGACCGGAAATGGACCAGAGGCGACAAGGAAGAAGCTGGCCAC
AATTCGTCCGCAGACCAAACAGCAACTTAAAGCGCGTCTGCAGCTGCCCA
CGCCCAAAAACTCATCATCGTACGCTACGTCGCCGCCCCATTTGATCATC
AATGCCAACAACGAGCTTATTGACACCGACGCGGGGACTGGAGGAGGATC
TGGACGACTTCGACGAGGACGACGACGTGACGGACGCTGCTCACCATCGT
CGGCCAGTCGGAAACGATGGGTGCCGACGCGACTTCGTCGGAAGCATTTA
TATTCGGTGACGGTGGCACTGCGAAGGGCTATGGTTA
FMO09829.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:05:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12768-RD | 1855 | CG12768-RD | 340..1475 | 8..1134 | 5365 | 98.8 | Plus |
| CG12768-RC | 2214 | CG12768-RC | 411..1546 | 8..1134 | 5365 | 98.8 | Plus |
| CG12768-RB | 1960 | CG12768-RB | 157..1292 | 8..1134 | 5365 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22913264..22914030 | 317..1079 | 3625 | 99.1 | Plus |
| 3L | 28110227 | 3L | 22911925..22912233 | 8..316 | 1530 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:05:26 has no hits.
FMO09829.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:36 Download gff for
FMO09829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12768-RA | 165..1310 | 1..1136 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:52:28 Download gff for
FMO09829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12768-RB | 149..1294 | 1..1136 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:53 Download gff for
FMO09829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12768-RB | 149..1294 | 1..1136 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:53 Download gff for
FMO09829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22911917..22912233 | 1..316 | 98 | -> | Plus |
| 3L | 22913264..22914092 | 317..1136 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:52:28 Download gff for
FMO09829.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22905017..22905333 | 1..316 | 98 | -> | Plus |
| arm_3L | 22906364..22907192 | 317..1136 | 98 | | Plus |
