FMO09831.5prime Sequence
890 bp (890 high quality bases) assembled on 2010-10-27
> FMO09831.5prime
CAGTCGGACATGCAAACATTTAAGGTCTGCGCTCTCCTGGCGTTCTGCTT
CGTCCTCGTTTCCGCCCGCGGCAGCAAACGGCGCGATGGCACCGTTACGA
TATCGGAGAGCGAACGAAAGAACATTGAGGACTTTCTGTTGGCCAAGCTT
AAGCAAAATTGCAGGCAGGAAGACGATCGCGCCTGTAAGATGGTCAAGAT
GTCTATTGTGATGAACCATCTGTACCTGAACACCCGTATCGACCTTGGCG
ACCGATTCAAGGTCACAGAAAACGGGAATATCTCAATGGTACCAGATGAT
CCGGAGGTCAACCAGCTGCTGTCACGCTCTATGGGGTCCGATGAGGAGAC
CTTCGCCCTTCTGATGGCCAACAAGCTGTGGAAATTCATTCGTTCGCGCT
CCCTGCGATACAAGTTCTCAGAGAACACGGACTTTGTGATCAACAGCGAT
CCGGAGGGCAGTCTGAATTTGGGCGTATCAGTGCGCCCCCTGGAGGCGTT
GCAGGAAGGGCGAGGCAAGATGAAGAACATGGGGCCACTGCTGATGATGA
TGGCGGCCAAGACGGGCATGGTGGGAGCGCTTCTGCTCAAAGGACTCTTC
CTGCTGGCCGGCAAGGCTCTAATTGTCTCGAAAATCGCCTTGCTGCTGGC
GGTGATCATCTCACTGAAGAAGCTGCTCTCTAGCAAGAAAACCATCGTGG
AGGTGCCATCCCACCACGACAGCTATAGCTCCGGGTGGTCGAGGGCCTTT
GACGGGTTCGTGGAGGGACTTGTAGACGTGCCCGCCGATATATTGGCCAA
GGAGGTGCAGCACCAGCAGGAGCAGCCCAAAACATGGCTTACAGTGGCCA
ACAGCCGGGGAAAGTGGCGCACGCAAGCTTTCTAGACCAT
FMO09831.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Osi3-RB | 1381 | CG1150-RB | 233..1095 | 10..871 | 4290 | 99.9 | Plus |
| Osi3-RA | 1129 | CG1150-RA | 233..1095 | 10..871 | 4290 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6217316..6217913 | 275..871 | 2940 | 99.8 | Plus |
| 3R | 32079331 | 3R | 6216638..6216819 | 95..276 | 895 | 99.5 | Plus |
| 3R | 32079331 | 3R | 6216064..6216153 | 10..99 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:05:34 has no hits.
FMO09831.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:37 Download gff for
FMO09831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi3-RA | 220..1099 | 2..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:52:33 Download gff for
FMO09831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi3-RA | 224..1103 | 2..879 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:57 Download gff for
FMO09831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Osi3-RA | 224..1103 | 2..879 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:57 Download gff for
FMO09831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6216055..6216153 | 2..99 | 95 | -> | Plus |
| 3R | 6216643..6216818 | 100..275 | 100 | -> | Plus |
| 3R | 6217317..6217921 | 276..879 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:52:33 Download gff for
FMO09831.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2041777..2041875 | 2..99 | 95 | -> | Plus |
| arm_3R | 2042365..2042540 | 100..275 | 100 | -> | Plus |
| arm_3R | 2043039..2043643 | 276..879 | 99 | | Plus |
