FMO09832.5prime Sequence
626 bp (626 high quality bases) assembled on 2010-10-27
> FMO09832.5prime
CAGTCGACATGGAGATGAGTGCTGCCATGTTCGCACGCGTTTCCTTCTAC
CCCACCCTGCTGTACAATGTCCTGATGGAAAAGGCATCGGCCAGGAATTG
GTACGATCGCATCGATGAGCATGTGATACTGGGAGCACTGCCCTTTCGCA
GCCAGGCCAATGACCTCATTGAAAAGGAGAACATGAAGGCGGTGGTGTCG
ATGAACGAGGACTATGAGCTGACCGCCTTCTCCAACAACACGGAGAAGTG
GCGAAAGCTTGGCATTGAGTTCCTGCAGCTGGCCACCACCGACATCTTTG
AGTCGCCCAATCAAGAAAAGCTCTTCCGCGGCGTGGAATTCATAAACAAG
TTCCTGCCTCTAAAGCAAAGAATTGGTGGCCTAAGTTCCTCCTACCAGCC
GGAGAACGTGGGTTCTGTCTATGTGCACTGCAAGGCTGGTAGGACGCGAA
GTGCCACTTTGGTGGGATGCTACCTCATGATGAAGAACGGATGGACTCCG
GATCAGGCGGTTGACCACATGCGTAAGTGCCGACCGCACATTCTGCTGCA
CACCAAACAATGGGATGCCCTCCGGTTATTCTACACAAACAATGTGGAGA
CGAAATCAGCAAGCTTTCTAGACCAT
FMO09832.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Plip-RB | 901 | CG10371-RB | 171..778 | 1..608 | 3010 | 99.7 | Plus |
| Plip-RA | 878 | CG10371-RA | 168..755 | 21..608 | 2940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:05:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23758978..23759295 | 165..482 | 1590 | 100 | Plus |
| 3R | 32079331 | 3R | 23758775..23758918 | 21..164 | 720 | 100 | Plus |
| 3R | 32079331 | 3R | 23759357..23759483 | 482..608 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:05:37 has no hits.
FMO09832.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:38 Download gff for
FMO09832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plip-RB | 169..776 | 1..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:52:35 Download gff for
FMO09832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plip-RB | 171..778 | 1..608 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:59 Download gff for
FMO09832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plip-RB | 171..778 | 1..608 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:59 Download gff for
FMO09832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23759358..23759483 | 483..608 | 100 | | Plus |
| 3R | 23758775..23758918 | 21..164 | 100 | -> | Plus |
| 3R | 23758978..23759295 | 165..482 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:52:35 Download gff for
FMO09832.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19585080..19585205 | 483..608 | 100 | | Plus |
| arm_3R | 19584497..19584640 | 21..164 | 100 | -> | Plus |
| arm_3R | 19584700..19585017 | 165..482 | 100 | -> | Plus |
