FMO09834.5prime Sequence
1149 bp (960 high quality bases) assembled on 2010-10-27
> FMO09834.5prime
CAGTCGACATGAAGCTCTTGTTCGGTTTGCTGATGACCGTGCTAGCCCTT
AGCGGCGTTTTCACATTGCCAGCGCGCAACGATCCACAGGACGATGCGGA
AGTGATTAAAGTACCATCACGCCCTCAGCCCGAATCGGATTTCCATAACT
TCCGCGGCGTCATCGATACCGGCTCTGGTTATCCCTTCCTTCAGCCGAAT
CCTTCGAGCTTCAATGTGGGCATCTTCGACTCCTTCGATGATCTCTTCCG
CCGTCTGCGCACCCGTTTGTGGCCTGTAATTGGCAGGGATTCCGGTGAGG
AGGGCGCTTCTCCGACTGGCGACTCTGATGATTCTAGTGATGGCAGCGGA
GCAGGCTTTCCATTTGGAGTGCGTCCTCTGATTCCGCTGGACTCGAAGAA
CGCCAACACCACTTCCACCATTAAGGTTGTCAATGGCCATAAGGTTGAGA
TCAACGAGACTGTGTATGGTGATAGCAACAGCGTCTTTAAGGTCCGCTTG
GTGAATGTGCGTCCTTTGGAGAGCGGCGAGGAGGTGGCCCAGGGAGTGCA
CACCAGTGGAGGTGACTTCCAGCCGGCGTTGGAGCCCAGCACCTCCGCCC
CGCCCAAGAAGTTCGAGGAGTTCGACGAGGAGGACGACGATGATCGCCGC
GAGCCGCTGGAGAAGCAGCCACAGGATAACGAGGTGCGCGACATTGATGA
GCCCAAGTCCACAACACCAACAAACACAAGTTATACAACAAATCTTCACA
CCAGCGCACCCATAGACTCCGAATTCGAAGCTTCCGATATCAGTGAGGAT
ATAGTGGAAACTCAACCGGAAGAGCAAAAGAACACCATGGATCAGCTGCA
CCCATGATGGAACCCCTGCGAGAGGAGATCAGACATGAGGAGATTTGGAG
CAGGACACGAGGACAAGAGTACTTGGAGAGGAAAGAGAAGAAGAGCCGTG
AGAATTCGATTCCTTCTAACGCCAAGACGCGAGGCTCCACTCCTTGGTGG
TGTTGAGCGAAACCTTCATTGATGAGTGGGGCCGAATTCGATCAGGATCG
GGATCGAGAGCACGATCGGATGAGATCAGATCATGGATTTGGACTTTGAA
ACGATCTTAACCACCGAATCGATTCCAGGAAACCTTTGTGTCCATTGAC
FMO09834.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:04:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vir-1-RB | 1849 | CG31764-RB | 243..1391 | 9..1149 | 5000 | 96.6 | Plus |
| vir-1-RA | 1765 | CG31764-RA | 159..1307 | 9..1149 | 5000 | 96.6 | Plus |
| vir-1-RG | 1814 | CG31764-RG | 232..1356 | 9..1149 | 4630 | 94.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:04:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12407185..12407468 | 707..424 | 1420 | 100 | Minus |
| 2L | 23513712 | 2L | 12403728..12404179 | 1149..706 | 1130 | 89.4 | Minus |
| 2L | 23513712 | 2L | 12407548..12407735 | 427..240 | 940 | 100 | Minus |
| 2L | 23513712 | 2L | 12409456..12409626 | 240..70 | 855 | 100 | Minus |
| 2L | 23513712 | 2L | 12421641..12421704 | 72..9 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:04:59 has no hits.
FMO09834.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:31 Download gff for
FMO09834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vir-1-RB | 225..1346 | 9..1123 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:52:18 Download gff for
FMO09834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vir-1-RA | 159..1280 | 9..1123 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:44 Download gff for
FMO09834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vir-1-RA | 159..1280 | 9..1123 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:44 Download gff for
FMO09834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12403755..12404177 | 708..1123 | 92 | <- | Minus |
| 2L | 12407185..12407466 | 426..707 | 100 | <- | Minus |
| 2L | 12407550..12407734 | 241..425 | 100 | <- | Minus |
| 2L | 12409456..12409637 | 57..240 | 96 | <- | Minus |
| 2L | 12421657..12421704 | 9..56 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:52:18 Download gff for
FMO09834.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12403755..12404177 | 708..1123 | 92 | <- | Minus |
| arm_2L | 12407185..12407466 | 426..707 | 100 | <- | Minus |
| arm_2L | 12407550..12407734 | 241..425 | 100 | <- | Minus |
| arm_2L | 12409456..12409637 | 57..240 | 96 | <- | Minus |
| arm_2L | 12421657..12421704 | 9..56 | 100 | | Minus |
