FMO09835.5prime Sequence
972 bp (972 high quality bases) assembled on 2010-10-27
> FMO09835.5prime
CAGTCGACATGAAGTGGCTATTAAATGGGCTCCTACTACTATTCATCATT
TTGATGGTTCATCGGAACCGGGCCGATGAAGATCTTGTAGTAGCTCCCGG
TCCAGACGACGATGGTGAGGGCCTAAATGTTCAGGATAAGGATATTTACG
ATATGTACGAAAACACCCAGATAAATGTCTGCGGCAATGTGGCGGATGGC
GTTTATTTGCCCTATGTTGGAAATTGCTCCAAATATATCGAGTGTGAAAA
CAATACTATTAAGGAAGTAGGCAGCTGCTTGGATTTGGCAAAGGATAATC
CAGATATTTGCGATCCGAACAAGTCGTGTGAGCTGGGCTACGATCCTGTT
CTCCAAGTGTGCACCTACATGGAGGAGGTACAGTGTCTGCCCACCTGTGA
GTCGTTCCGATTGAGCAGCTTCTGCTACGACAACACCTGTACCAAGTACG
TGCTTTGCTATTACGGCAAACCCGTGCTACGCCAATGCCACGATGGACTC
CAGTACAACAACGCCACGGATCGCTGTGACTTCCCCGAGTATGTGGACTG
TGTGGCCAACGACTGTTCCGCCACCTTCCAGCCAGAGGACATCATCTACC
TGGGTAGTAAGGCATCATGCAGCAAGTATTACGTCTGTTCCAATGGTCAT
CCGTGGGAACAGCAGTGTGCTCCTGGCTTGGCCTACAATCCCAGCTGCAA
GTGCTGCGACTTTGCCAAGAATGTTAACTGCACGATTGATGCTGTAGCCA
GGAATATTCTGCCATATTCCCGAACCCCTCTGCGTCGTGCTGACATTAAG
TGTCCCCTTATGGGAACTCACTTCTTCCCAGACAAATCTCGCCGAGATGC
ATATTATTACTGCGTCGAAAGACGTGGAGTCACACTAGACTGCACTCCGG
GTCTTTACTACGATCCCAAAGTGGAGGATTGCCGCAGACCTGACTCGTTG
GTGTCGCAGCTTTCTAGACCAT
FMO09835.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:05:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10154-RB | 1023 | CG10154-RB | 41..988 | 9..955 | 4670 | 99.6 | Plus |
| CG10154-RA | 1165 | CG10154-RA | 41..988 | 9..955 | 4670 | 99.6 | Plus |
| CG10140-RA | 969 | CG10140-RA | 354..525 | 384..555 | 320 | 79.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:05:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13436221..13436705 | 734..250 | 2425 | 100 | Minus |
| 3L | 28110227 | 3L | 13436792..13437031 | 249..10 | 1200 | 100 | Minus |
| 3L | 28110227 | 3L | 13435870..13436079 | 943..734 | 1020 | 99 | Minus |
| 3L | 28110227 | 3L | 13439823..13439994 | 555..384 | 320 | 79.1 | Minus |
| 3L | 28110227 | 3L | 13438372..13438511 | 420..559 | 190 | 75.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:05:02 has no hits.
FMO09835.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:32 Download gff for
FMO09835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10154-RA | 34..990 | 1..961 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:52:19 Download gff for
FMO09835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10154-RA | 37..993 | 1..961 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:46 Download gff for
FMO09835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10154-RA | 37..993 | 1..961 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:46 Download gff for
FMO09835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13436792..13437031 | 10..249 | 100 | | Minus |
| 3L | 13435852..13436078 | 735..961 | 96 | <- | Minus |
| 3L | 13436221..13436705 | 250..734 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:52:19 Download gff for
FMO09835.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13429321..13429805 | 250..734 | 100 | <- | Minus |
| arm_3L | 13428952..13429178 | 735..961 | 96 | <- | Minus |
| arm_3L | 13429892..13430131 | 10..249 | 100 | | Minus |
