FMO09842.5prime Sequence
293 bp (293 high quality bases) assembled on 2010-10-27
> FMO09842.5prime
CAGTCGACATGGTATCCGAGTGGGTGGCACCAATCGTTATCACCAGCATT
TGGGCCTTCATTGGCATCATCTGCCCCTTCTTCGCCCGAGGACCCAACAG
GGGGGTGACTCAATGCTGCCTGATGCTCACCGCAGCAACTTGCTGGCTGT
TCTGGCTGTGCTGCTACATGACGCAGCTGAACCCCCTCATCGGACCCAAA
CTAAGCATGAACGAAATCATGATCATGGCCCGCGAGTGGGGCAATGAGAT
CAAGGACACCATGGCTGTCACCGTCGCAAGCTTTCTAGACCAT
FMO09842.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
VhaM9.7-b-RB | 1216 | CG7625-RB | 127..393 | 9..275 | 1335 | 100 | Plus |
VhaM9.7-b-RA | 699 | CG7625-RA | 127..393 | 9..275 | 1335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:06:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 21540269..21540392 | 152..275 | 620 | 100 | Plus |
3L | 28110227 | 3L | 21539988..21540083 | 9..104 | 480 | 100 | Plus |
3L | 28110227 | 3L | 21540152..21540200 | 103..151 | 245 | 100 | Plus |
3R | 32079331 | 3R | 3580243..3580286 | 272..229 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:06:12 has no hits.
FMO09842.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:43 Download gff for
FMO09842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM9.7-2-RA | 120..396 | 1..279 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:52:54 Download gff for
FMO09842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM9.7-b-RA | 120..396 | 1..279 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:13 Download gff for
FMO09842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
VhaM9.7-b-RA | 120..396 | 1..279 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:13 Download gff for
FMO09842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 21539981..21540082 | 1..103 | 96 | -> | Plus |
3L | 21540153..21540200 | 104..151 | 100 | -> | Plus |
3L | 21540269..21540395 | 152..279 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:52:54 Download gff for
FMO09842.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 21533081..21533182 | 1..103 | 96 | -> | Plus |
arm_3L | 21533253..21533300 | 104..151 | 100 | -> | Plus |
arm_3L | 21533369..21533495 | 152..279 | 98 | | Plus |