FMO09843.5prime Sequence
524 bp (50 high quality bases) assembled on 2010-10-27
> FMO09843.5prime
CAATCCACATGAAAATCCTCTCCCGTCTGGGTCGCCTGATGCGCTACACG
GTGGCCTACGCGGCAATCACACACTGCACCTTCGAGTACGTTGGCGATTT
CTTCCTGTGAAAAGGACCCTCCATGGAGCCCACCCTGCACTCGGACAACG
TTCTTCTCACCGATCGCTTGTCGAAACACTGGCGAACCTACCATCCCGGC
GACATAGTCATCGCCATATCGCCCATCAAAGCCGATCAGTTCATTTGCAA
GCGTATCGTGGCCGATTCCGGTGATCAGGTGCTAATCCAGAATCCCATTC
CCATTGAGGCGGAATTTAGAGGTAATTCCGATGACAAGAAAAAGCCCGTG
ATGGTCAAGGACTATGTGCCGCGCGGACACGTTTGGATTGAGGGTGACAA
CAAGGGAAACAGCTCGGATTCCCGCTACTACGGACCCATTCCGGTGGGCC
TCATCCGGAGCCGCATGCTCTGCCGCATCTGGCCGATATCCGAGGCCACG
GGTCTAGCAAGCTTTCTAGACCAT
FMO09843.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:06:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9240-RA | 907 | CG9240-RA | 171..670 | 7..506 | 2320 | 97.6 | Plus |
| CG9240-RB | 991 | CG9240-RB | 355..754 | 107..506 | 1850 | 97.5 | Plus |
| CG9240-RB | 991 | CG9240-RB | 171..271 | 7..107 | 475 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:06:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15700409..15700813 | 506..102 | 1860 | 97.3 | Minus |
| X | 23542271 | X | 15700989..15701089 | 107..7 | 475 | 98 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:06:15 has no hits.
FMO09843.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:44 Download gff for
FMO09843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9240-RA | 280..788 | 1..506 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:52:56 Download gff for
FMO09843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9240-RA | 162..670 | 1..506 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:16 Download gff for
FMO09843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9240-RA | 162..670 | 1..506 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:16 Download gff for
FMO09843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15700409..15700807 | 108..506 | 97 | <- | Minus |
| X | 15700989..15701092 | 1..107 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:52:56 Download gff for
FMO09843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15594442..15594840 | 108..506 | 97 | <- | Minus |
| arm_X | 15595022..15595125 | 1..107 | 94 | | Minus |
