FMO09845.5prime Sequence
885 bp (885 high quality bases) assembled on 2010-10-27
> FMO09845.5prime
CAGTCGACATGCGCGCATTCATTGTCCTGTGTTTGGTGGCAGTCACCTGC
GCCGATAAGCTCGGCTACAACTACCAGCCCGTTGGCCACTCCAGCTCCGG
ACTGTCCTTCGCTCCTGGCAGCGGCTCTATCAGTGGTGGATCTATTGGAG
GAGGCTCCATCGGAGGAGGTTCTATTGGAGGAGGCTCTATTGGAGGAGGC
CTCATTGGTGGTGGCTCTATCGGAGGAGGAAGCATCGGAGGTGGATCCCT
TGGTGGTTCCATCGGTGGTGGCTCCATCGATTCCGGTCTTGGCGGTCTTG
GTGGACTCGGTGGTCTAGGAGGTGGCGACGCTCTGGCCGCTCCAGTCTCC
TACAACGCCCCCGCTCCCGCTGCTGAGCTCCAGAAGGAATTCTTCACCTA
CTCCGCCAACGAGCAGGACTTCGATGAGCCACAAGAACTGGAGCGTGTTG
CTGGATCCGTAAACAAGGGACTGCGCGTTGTCTTCATCAAGGGACCCGAG
AACCGTGGTCTGGAGAACGCTGCCCTGGCCCTCGCCAAGCAGGCTGCCCA
GCAGGAGACCGCCATCTATGTCCTGAACAAGCAGGCTGATATTGGAGATC
TTGCCCAGAAACTGAACGCCATCCGCAACAACAACAACAACAAGCCCGAG
GTGCACTTCGTCAAGTACCGCACTCCCGAGGATGCTGCCAACGCCCAGCG
CGCCATCCAGGGTCAGTACGACCAGCTGGGAGGATCCTCTCAGGCTCATG
ATGGTGGTGTTGCACCCGCCCTGAACTTCGCCTCCGCTGGACCCGTCCAG
AAAGCTAACGCCCAGATCCCCGACAACGCCTACCTGCCCACTTCTGTGTT
CCGTCGTCTGCGTTTCGCAAGCTTTTTAGAACCAT
FMO09845.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TwdlB-RA | 1025 | CG6478-RA | 48..905 | 9..866 | 4275 | 99.9 | Plus |
| TwdlL-RA | 1002 | CG6447-RA | 51..900 | 9..858 | 3365 | 93.1 | Plus |
| TwdlL-RB | 1066 | CG6447-RB | 140..964 | 34..858 | 3330 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26622571..26623413 | 866..24 | 4200 | 99.9 | Minus |
| 3R | 32079331 | 3R | 26624689..26625513 | 858..34 | 3330 | 93.6 | Minus |
| 3R | 32079331 | 3R | 26632323..26632849 | 338..864 | 1735 | 88.6 | Plus |
| 3R | 32079331 | 3R | 26619592..26620103 | 345..856 | 1615 | 87.7 | Plus |
| 3R | 32079331 | 3R | 26630220..26630621 | 384..785 | 1185 | 86.3 | Plus |
| 3R | 32079331 | 3R | 26628051..26628458 | 785..378 | 1170 | 85.8 | Minus |
| 3R | 32079331 | 3R | 26634088..26634452 | 375..739 | 850 | 82.2 | Plus |
| 3R | 32079331 | 3R | 26626108..26626448 | 796..456 | 820 | 82.7 | Minus |
| 3R | 32079331 | 3R | 26619263..26619462 | 28..227 | 445 | 81.5 | Plus |
| 3R | 32079331 | 3R | 26620800..26621063 | 737..474 | 435 | 77.7 | Minus |
| 3R | 32079331 | 3R | 26631931..26632046 | 9..124 | 385 | 88.8 | Plus |
| 3R | 32079331 | 3R | 26656956..26657063 | 483..590 | 300 | 85.2 | Plus |
| 3R | 32079331 | 3R | 26640530..26640720 | 534..724 | 295 | 77 | Plus |
Blast to na_te.dros performed 2014-11-26 15:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 7802..7847 | 110..155 | 113 | 71.7 | Plus |
FMO09845.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:44 Download gff for
FMO09845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlB-RA | 53..910 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:52:58 Download gff for
FMO09845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlB-RA | 48..905 | 9..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:18 Download gff for
FMO09845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| TwdlB-RA | 48..905 | 9..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:18 Download gff for
FMO09845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26622571..26623413 | 24..866 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:52:58 Download gff for
FMO09845.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22448293..22449135 | 24..866 | 99 | <- | Minus |
