FMO09846.5prime Sequence
1114 bp (984 high quality bases) assembled on 2010-10-27
> FMO09846.5prime
CAGTCGACATGAAGTTCTCTCTGGGTTTGTTAGTCCTCTTTTTGGGCGCC
ACTCTTGTGGCTGCCGAACAGGATTACGAGGGTTACCGCATCTATGAGGT
GATTCCATCGACTGCCGACCAGGCTGACCTTTTGCACCAACTAAGTCTGC
AGGGATACGATTTCATCAGTGAGACTCGTCTATTGGGTCATCCTTCTCGT
GTGATTGTGAGTCCCGCTCAGTTGAAGCACTTCCAGCAGCTGGTTGAGGC
AGAGAAAATGACACTTACTCTGGTGAACTCCAACCTGGGCGCCTCCATAG
CCGAGGAGTTTGCCCAGCGACAGATGCAGCGCCTTTTGGCGCCCATCACG
GGAAAGGGTCGCTTGAGCACGGAGCGCTACTATACGCACGAGGAGATTAT
CAACTATATCGATGACCTGGCCCAGCGTTTTCCCAGCCGAGTCTTCGTTA
AGACCGTTGGCTGGTCCTATGAACAGCGAGTCCTGAAAACCATCACCATC
ACCAATGGCGATGGCAAGGCTAACAAGAAAGTGATCTTCATGGATGGTGG
TTTCCATGCTAGGGAATGGATTTCTCCAGCAGCAGTCCTCTACGTCATCG
ATCAATTGGTGGAGCAGTTCGAGGAGAACGCTCATCTGCTGAAGGACTAC
GACTGGGTCATCCTGCCACTGGTCAATGCCGATGGCTATGAGCACACCCA
GACCGGAACACTTGCTCGAATGTGGCGCAAAACCCGTCAGCCATACACGT
ACGCTGGACAGACGTGTTACGGAGCTGATCCCAACCGGAATTTCGACTTC
CATTGGAACGAGGAGGGCGCCTCCTCGAATCCATGTGCGGACACCTATGC
TGGACCGACGGCCTTTTCCGAACCCGGAGACGATTACCGTCCGGGATCTG
ATGCACTCACTGGCCGATCGGGGAATTATGTACCTCACCCTCCACTCCTA
CGGCAACTATTCTGCTGTATCCTGGGGATGGACGTCGGATTCTGCCCGAA
AATTGGGAGGATCTTGGATGCGGTAGCCCGCCACTGAACTGAGGTCATGA
GAAACGCAACTGGTACGGGTTCACCTATGGGATTCCTCCACAATGTCCTG
GTAATTGCTGCTGA
FMO09846.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8562-RA | 1483 | CG8562-RA | 21..1122 | 9..1113 | 5090 | 98.1 | Plus |
| CG18417-RA | 1480 | CG18417-RA | 509..760 | 483..734 | 335 | 77 | Plus |
| CG8560-RB | 1334 | CG8560-RB | 524..726 | 489..691 | 310 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:05:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7398463..7399367 | 82..987 | 4385 | 99.7 | Plus |
| 3L | 28110227 | 3L | 7398305..7398378 | 9..82 | 370 | 100 | Plus |
| 3L | 28110227 | 3L | 7403007..7403209 | 691..489 | 310 | 76.8 | Minus |
| 3L | 28110227 | 3L | 7400633..7400851 | 483..701 | 300 | 75.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:05:45 has no hits.
FMO09846.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:39 Download gff for
FMO09846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8562-RA | 9..1060 | 1..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:52:40 Download gff for
FMO09846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8562-RA | 12..1063 | 1..1053 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:03 Download gff for
FMO09846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8562-RA | 12..1063 | 1..1053 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:03 Download gff for
FMO09846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7398296..7398378 | 1..82 | 95 | -> | Plus |
| 3L | 7398464..7399366 | 83..986 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:52:40 Download gff for
FMO09846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7391396..7391478 | 1..82 | 95 | -> | Plus |
| arm_3L | 7391564..7392466 | 83..986 | 99 | -> | Plus |
