FMO09847.5prime Sequence
512 bp (512 high quality bases) assembled on 2010-10-27
> FMO09847.5prime
CAGTCGACATGGTCCAACGCTTGACTCTGAGACGACGTCTGTCGTACAAC
ACCCGCTCCAACAAGAGGCGCATTGTGCGCACTCCCGGAGGCCGTCTGGT
GTACCAGTACGTGAAGAAGAACCCCACTGTGCCACGCTGTGGTCAGTGCA
AGGAGAAACTCCACGGGATCACCCCCTCCCGGCCCAGCGAGCGTCCCAGG
ATGTCCAAGCGTTTGAAGACCGTCTCCAGGACCTACGGAGGTGTCCTGTG
CCACAGCTGCCTGCGAGAGAGAATCGTCCGCGCTTTCCTCATCGAAGAGC
AGAAGATCGTCAAGGCTCTGAAGAGCCAGCGCGAGGCTTTGGTCAAGCCC
GTCAAGAAGGTTGTGGAGAAGAAGCCGGTGAAGGCTGCCGCCAAGAAGCC
CGCGGGAAAGGCAGCCGGAAAGCCAGGTGCCAAAGTCGCCGGCAAGAAGC
CCGCTCCCAAGGGCGCTCCTAAAGGAGTCGTCAAGTCCAAGAAGGCAAGC
TTTCTAGACCAT
FMO09847.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:05:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL34a-RC | 603 | CG6090-RC | 41..526 | 9..494 | 2430 | 100 | Plus |
| RpL34a-RB | 621 | CG6090-RB | 59..544 | 9..494 | 2430 | 100 | Plus |
| RpL34a-RA | 606 | CG6090-RA | 44..529 | 9..494 | 2430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:05:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26058497..26058917 | 494..74 | 2105 | 100 | Minus |
| 3R | 32079331 | 3R | 9400596..9400878 | 356..74 | 830 | 86.2 | Minus |
| 3R | 32079331 | 3R | 26058980..26059044 | 73..9 | 325 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy6 | 7826 | gypsy6 GYPSY6 7826bp | 1445..1520 | 327..398 | 118 | 65.8 | Plus |
FMO09847.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:39 Download gff for
FMO09847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL34a-RB | 40..533 | 9..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:52:43 Download gff for
FMO09847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL34a-RA | 44..537 | 9..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:05 Download gff for
FMO09847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL34a-RA | 44..537 | 9..503 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:05 Download gff for
FMO09847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26058488..26058917 | 74..503 | 99 | <- | Minus |
| 3R | 26058980..26059044 | 9..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:52:43 Download gff for
FMO09847.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21884210..21884639 | 74..503 | 99 | <- | Minus |
| arm_3R | 21884702..21884766 | 9..73 | 100 | | Minus |
