Clone FMO09848 Report

Search the DGRC for FMO09848

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:98
Well:48
Vector:pMK33-CFH-BD
Associated Gene/Transcriptcrok-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09848.5prime Sequence

479 bp (479 high quality bases) assembled on 2010-10-27

> FMO09848.5prime
CAGTCGACATGAAAACACTGGAGAAATATATCCTATTCGCCATCGTGCTC
TGCTGCCTGCTGCAATTGGGCCAGGCGATCAAATGTTGGGACTGTCGCAG
CGATAACGATCCCAAATGCGGGGATCCTTTTGACAACAGCACGCTGGCCA
TCACCGATTGCCAACAGGCGCCGGAGCTGGAGCATCTGAAGGGCGTGCGA
CCGACAATGTGTCGCAAGATCCGGCAGAAGGTGCACGGTGAATGGCGCTA
CTTTCGCAGCTGCGCCTACATGGGCGAGCCGGGCATCGAGGGCGACGAAC
GCTTCTGCCTGATGCGCACTGGCAGCTACAACATCTTCATGGAGTTCTGC
ACGTGCAACAGCAAGGACGGCTGCAACTCGGCGGGCATCCATAGGCTAGG
ACTGATGGGCGTCCTAACTGGCACACTGCTCTCGGTGATTGTGGCTCATC
TTCTGCGGCAAGCAAGCTTTCTAGACCAT

FMO09848.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
crok-RA 1033 CG17218-RA 90..542 9..461 2265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12173208..12173600 69..461 1965 100 Plus
2L 23513712 2L 12173070..12173131 9..70 310 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:05:54 has no hits.

FMO09848.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:40 Download gff for FMO09848.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17218-RA 87..539 9..461 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:52:45 Download gff for FMO09848.5prime
Subject Subject Range Query Range Percent Splice Strand
crok-RA 90..542 9..461 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:06 Download gff for FMO09848.5prime
Subject Subject Range Query Range Percent Splice Strand
crok-RA 90..542 9..461 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:06 Download gff for FMO09848.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 12173070..12173130 9..69 100 -> Plus
2L 12173209..12173600 70..461 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:52:45 Download gff for FMO09848.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12173070..12173130 9..69 100 -> Plus
arm_2L 12173209..12173600 70..461 100   Plus