Clone FMO09849 Report

Search the DGRC for FMO09849

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:98
Well:49
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG10300-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09849.5prime Sequence

959 bp (959 high quality bases) assembled on 2010-10-27

> FMO09849.5prime
CAGTCGACATGGCGAACACCCTGAGAACTCTCGACCCAAAGTTGGCGGCT
CTGGCCAAAAGTGAGTGCAACGAGGAGCAGGCGCAGCGAGCGGAGATTAT
TGCCACCATTAAGACATGGATCACCAAGTCGCCGCACCTTAAGGCGCCCA
CGGATGAGCAGCTTATCCTGGCCTTTCTGCGGCGTTGCCGTTTCAGCCAG
GAGGAGACCAAACGGCGATTCGACAACTACTACTCCCTGCGCAGCGTGTT
CCCGGAGGTTCTGGGATCCCGACAGGTGGACGAGGCCCTGCTCACCCAGT
TGCAACGCGGAATCCATGTGATACCCATGCGACCTGTGAGTCCCGAGGGG
CCAAGGGTTATCATCTCGCAGTTCCGAAACATCGATCCCAAGAAATCGAA
TCCCCGCGAAGCCTTCAAACTGATCTTCATAATGTTGGAACTATTGGCTT
TGGAGTGCGATAATGCCGCGATTTCCGGCTTGATCTGGGTTGTGGATGCC
AGAGATGTTACCATGGAGCAGATGATGCAGTACGATCCCTTCCTGCTGAA
GAAGGCATTTGCTCTGGTGGACCAATGCATACCACTGCGATTTGTTGAGA
TTCATATGATCAATATGCGCAAGGAGGGACAAACCATATTCAATTTTGTA
ACGAAGTTTTTGCCCTCCAAACTGCCTTTCAAGTTCGTGGTCCACAAAAA
GTCGGAGGATCTGTACCAGCACCTGCCCAGAGATGTGATGACCATCGAGT
ATGGTGGCACCAATGGCTATCAGGCAGAGGCAGTGGATCATTGGCGCCAG
AAGCTGCTGGACAGCAAGGATTATCTGGCCAAGGATGCCCAGTATGGTAC
TAATGAGAAACTGCGCGTCGGATTGGCCAGTGCCTGGGCCAATGGAGAAC
TGGACGGGATGAGCGGTTCTTCCGCAAATTGGAGCTAGATGCAAGCTTTC
TAGAACCAT

FMO09849.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:06:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10300-RA 1484 CG10300-RA 32..964 9..940 4640 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:06:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23712093..23712466 310..683 1870 100 Plus
3R 32079331 3R 23711558..23711859 9..310 1510 100 Plus
3R 32079331 3R 23712534..23712793 682..940 1250 99.6 Plus
Blast to na_te.dros performed on 2014-11-26 15:06:32 has no hits.

FMO09849.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:46 Download gff for FMO09849.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10300-RA 23..966 1..945 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:53:04 Download gff for FMO09849.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10300-RA 25..968 1..945 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:24 Download gff for FMO09849.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10300-RA 25..968 1..945 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:24 Download gff for FMO09849.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23711551..23711859 1..310 98 -> Plus
3R 23712094..23712466 311..683 100 -> Plus
3R 23712536..23712797 684..945 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:53:04 Download gff for FMO09849.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19537273..19537581 1..310 98 -> Plus
arm_3R 19537816..19538188 311..683 100 -> Plus
arm_3R 19538258..19538519 684..945 98   Plus