Clone FMO09850 Report

Search the DGRC for FMO09850

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:98
Well:50
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG13339-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09850.5prime Sequence

482 bp (482 high quality bases) assembled on 2010-10-27

> FMO09850.5prime
CAGTCGACATGGCAGAAACCACTGGTGTGCAAATAAAACTGGAACAGCAA
AACATCAAGGAGCGCCTGAATCTGCACGTCAAGCGGCGCCTGCAGCAGGA
TGCGGATAATCCCGCCGAGAGTCCCGAATTGCTGCCCACCGATGCGAATG
CCAAGCGCAGCAAGACGAAAGATGTCTCAAAACCAAGAAAACCCTACCAA
AAACGGACAGAAAAACCGAAAACAGAGGCGACCAAGTGCAAGAAAGTTGG
ACAATTGGGCAGTCCGGCGGGTGAAGTGGATCCAATGGATGACCAGGAGA
CGGAAGGCTTTTCCCCGGAGGCGCCGGATGGCAAATCCGCCAGACGGGAT
TGCTGCAAAAATGCCGACATCCTCAACATAGTTTTGAACGCTAAGAAACG
TAGTTTAATGCAGGATCCTGAAGTTCAGGCCTTCTGGACCGAAATAACCA
ATTGCATAAAGGGCGCAAGCTTTCTAGACCAT

FMO09850.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:06:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG13339-RA 662 CG13339-RA 61..527 7..472 2295 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:06:35
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13824918..13825157 7..246 1200 100 Plus
2R 25286936 2R 13825209..13825428 245..464 1100 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:06:36 has no hits.

FMO09850.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:47 Download gff for FMO09850.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13339-RA 22..499 1..478 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:53:05 Download gff for FMO09850.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13339-RA 56..533 1..478 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:26 Download gff for FMO09850.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13339-RA 56..533 1..478 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:26 Download gff for FMO09850.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13824913..13825157 1..246 98 -> Plus
2R 13825211..13825443 247..478 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:53:05 Download gff for FMO09850.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9712418..9712662 1..246 98 -> Plus
arm_2R 9712716..9712948 247..478 97   Plus