Clone FMO09856 Report

Search the DGRC for FMO09856

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:98
Well:56
Vector:pMK33-CFH-BD
Associated Gene/TranscriptSgt1-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09856.5prime Sequence

560 bp (560 high quality bases) assembled on 2010-10-27

> FMO09856.5prime
CAGTCGACATGTCCGTGCGCCACGACTGGTACCAGTCGGAGACCAAGGTG
GTCATCACCGTGCTCCTGAAGAACGCCGTCGATAAGAACTATGCTGTGGA
GATTACCCAGAAGCGAGTCCACATGACGGCGGATGGCTACGAGTTGGACC
TGAAGCTGCTTCATCCCATTGTTGTGGAGCGTTCCTCCTACAAGGCCTTT
TCGACCAAAGTGGAAATCACACTGGCTAAGGAGACGGGAATTCGGTGGGA
GAATCTGGAGGAGGCCATCGTGGCTGCACCGGTGAAACCCAAGGCCAAGA
ACTGGGACCAGCTGGTCAGCGAGGAGGAAAAGATCGACGAGAAGGAGGCC
AAGGGCGAGGCGGCCCTCACCAACCTGTTCAAGAAAATCTACAGCTCATC
CTCGCCCGAGGTCCAAAAGGCCATGAACAAGTCCTTCTCGGAGTCCGGAG
GCACCGTGCTCAGCACCAACTGGAATGAGGTGGGCAAAGAAAGAGTCACC
GTGAAGCCTCCAAATGGAACCGAGTTCCGCGAGTGGGAGAAGGCAAGCTT
TCTAGACCAT

FMO09856.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
Sgt1-RA 1085 CG9617-RA 153..686 9..542 2670 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 8304589..8305122 542..9 2670 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:07:46 has no hits.

FMO09856.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:58 Download gff for FMO09856.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9617-RA 130..675 1..548 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:53:38 Download gff for FMO09856.5prime
Subject Subject Range Query Range Percent Splice Strand
Sgt1-RA 146..691 1..548 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:51 Download gff for FMO09856.5prime
Subject Subject Range Query Range Percent Splice Strand
Sgt1-RA 146..691 1..548 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:51 Download gff for FMO09856.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 8304584..8305129 1..548 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:53:38 Download gff for FMO09856.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4130306..4130851 1..548 98   Minus