FMO09864.5prime Sequence
1122 bp (1004 high quality bases) assembled on 2010-10-27
> FMO09864.5prime
CAGTCGACATGGCGACCATAAGTTTTTGCAATAGGAAATATGTCCGTCTG
TGGCCAGTGCTCATACTGTTCAATGTGGCACTCCTGCTGGTTTGGAGGAA
CCTGCAGCAGGCCCAGAAACTGGCCGCATCTTCTAATACTGGTGGGCAAA
AGTCGGTAGGACTTTTGCTGTCCAACGAGTCGAATCCCTCACGTTTTTCT
GCAAACTTCCATCTCGCCAATGATCAGCATCCGAAAATAATCCGGCGAGA
GGACTCCGCTCGCACCAAGGAATTGCGATCATTGCTCAAGTGCCGCGACC
GATCGCTCCGTTTCGAGAGGCTTCAGCACGGAGAGTTCTGGCTGCTTCAG
AATCTTGTCATGGGACGAAAGAGTCGGGAAGTCGGCTGTGCCGAGTCCGT
GACGTATACCACCAACGGGGACTTTACGTTCTTCGATAATCTGGAAATGG
TGGTATCACGTTGGCGTGCTCCAGTTAGTTTTGCCATCCACACTCCAGGT
TATGATCTTAACACCACACTGGATGCCATTCGGTATGTGCGAAACTGTTT
GCCGGAGAGCGATAGCATCAAGGACTGGGTCTCCTTTCACGTGTACTTCC
CAAATCAGCACATGCCGGAATACGTGCCATATGACGAGGCCGAGGTACTA
ATGTATCCGCACATGTGCACCCTGGCCAATGGATCGTTGGTATCGCCGCT
CTACACGCAAATCCCAACCACGGATAGCTACAAGTCAAGGGCCAACCTCA
CGTACCCCATCAATGTGGGCAGGAATATAGCCAGGCTGGCGACCAACACC
CACTTCATCTTTGCCTGCGACATCGAGCTGTATCCCAGTGTGGGCTTCGT
CGACCAATTCCTGGACATGGTGGCCAGAAACCACAGTGTCCTTGCACTGG
ATCCGCGGCAACGCAGAAAAGGTGTATCCTCTACCCGTTTTCGAGATCGA
AACGGGCGCCAAAGTGCCGGTAGACAAGGACGAATTGTTGGTCCTTTTAT
CGAAGCAGCAAGGGCAGGTGTTCCCCTGAAGCTTGGCCCCACATGCCCAC
ACTATCTGGCAGAGAGTGGCTCATCGACCTCTCAGCGATGACATCTGCAC
GGTTAGCAGGCCTGCAATTGAG
FMO09864.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11149-RE | 1999 | CG11149-RE | 291..1393 | 8..1101 | 5070 | 98 | Plus |
| CG11149-RD | 1898 | CG11149-RD | 190..1292 | 8..1101 | 5070 | 98 | Plus |
| CG11149-RC | 1941 | CG11149-RC | 233..1335 | 8..1101 | 5070 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:08:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5718844..5719431 | 1047..460 | 2665 | 97.6 | Minus |
| 2L | 23513712 | 2L | 5719511..5719963 | 460..8 | 2265 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:08:14 has no hits.
FMO09864.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:02 Download gff for
FMO09864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11149-RA | 226..1291 | 1..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:53:53 Download gff for
FMO09864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11149-RC | 226..1291 | 1..1065 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:05 Download gff for
FMO09864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11149-RC | 226..1291 | 1..1065 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:05 Download gff for
FMO09864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5718825..5719430 | 461..1065 | 97 | <- | Minus |
| 2L | 5719511..5719966 | 1..460 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:53:53 Download gff for
FMO09864.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5719511..5719966 | 1..460 | 99 | | Minus |
| arm_2L | 5718825..5719430 | 461..1065 | 97 | <- | Minus |
