FMO09871.5prime Sequence
1112 bp (950 high quality bases) assembled on 2010-10-27
> FMO09871.5prime
CAGTCGACATGTGCTGCAGCTGCTGTGGGGTGACCCAACAAAAGGCCTGG
GTCTTCGGCCTGGGAACCTTTTTCGCGGTCTCCGGACTCCTGGCCATAAT
ATGCTGGCCTGGCTTTATAGACTCAGGGATTATGAAGGCCTTGCCGTTGA
CACCCACTTCAAAGACTTTTGAAAAATGGGAGGAGCTGCCCATTCCGGTG
TATGTCTACATGTATCTTTGGAACTGGACAAATGCCGCAGATGTGCAGGC
TAATGGAGTAAAACCTATTTTCGCGCAACTTGGACCCTATGTTTATCGAG
AGGAGAGGAAGAAGATGGATCTTGAGTGGCACGACAATGGCACAGTTACC
TTTAACCCCAGAAGAACTTGGTTCTGGGAAGAGGAGCTCTCTGGCGGCAA
GCAAACGGATTTAATTACCGCCCCACATTTACCTTCATTGGCTGCTTCAA
ACCAAATGCGGAATAGCAACGTCTTCCTGAAATTCATGTTCAACGAGGCC
CTAAATGCGAATGGTGGACATCTCTTTGTGACCCACACGGCAGCTGAATG
GCTGTTCGAAAGTTTCTACGACGAATTTTTGCATTACGCCATGACCCTGA
ATAATCCATTGGTCCCAAAAATCGAGTCGGATCACTTTGCCTGGTTCCTC
AACCGTAACGGATCGAAGGACTTCGAGGGTCCCTTCACTGTACACACCGG
AGTGGGTGACATCAAGGAGATGGCTGAAATTAAGTATTCGGAAGGGCCAG
AATCACACGGGATGGTACGACGGAGAATGTGGACGTCTCAATGGCAGCAC
CACGGATCTTTTTGTGCCCGATGAGCCCACGCAGAAGGCTTTGACCATCT
TCATTCCGGATACTTGTCGGATCATAAATCTTGAGTTCACCGGGCAGAGC
GAAACAATTCAGGCATCACGGGTTGAAGTACGAGATACGCCGCGTACCTT
CGACAATGGAAAGATCATGGTAACGCGAGTGCTGTGTCCTTTGGAGCGCA
GCAGACATTGTCTGCAACGGAGCCACTGACTTAGACGTGTTGCCGATGGA
GTTCCATGTACCTTTCTGCGATCATTTAGACAGGCGGAACGAAAGTTATG
CACCCGATAGCG
FMO09871.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:07:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ninaD-RB | 1342 | CG31783-RB | 38..1142 | 9..1100 | 4855 | 97 | Plus |
| ninaD-RA | 1727 | CG31783-RA | 38..1142 | 9..1100 | 4855 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:07:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18082223..18082787 | 440..999 | 2360 | 97.3 | Plus |
| 2L | 23513712 | 2L | 18081850..18082156 | 135..441 | 1535 | 100 | Plus |
| 2L | 23513712 | 2L | 18081665..18081794 | 9..138 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:07:54 has no hits.
FMO09871.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:03:59 Download gff for
FMO09871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaD-RA | 28..1155 | 1..1112 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:53:42 Download gff for
FMO09871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaD-RA | 30..1157 | 1..1112 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:55 Download gff for
FMO09871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaD-RA | 30..1157 | 1..1112 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:55 Download gff for
FMO09871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18081657..18081793 | 1..137 | 97 | -> | Plus |
| 2L | 18081853..18082155 | 138..440 | 100 | -> | Plus |
| 2L | 18082224..18082876 | 441..1078 | 95 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:53:42 Download gff for
FMO09871.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18081657..18081793 | 1..137 | 97 | -> | Plus |
| arm_2L | 18081853..18082155 | 138..440 | 100 | -> | Plus |
| arm_2L | 18082224..18082876 | 441..1078 | 95 | -> | Plus |
