FMO09872.5prime Sequence
1105 bp (975 high quality bases) assembled on 2010-10-27
> FMO09872.5prime
CAGTCGACATGGATCCGATGATTTGTGATCTGTGGTCTGGCCGCATTTGG
CTATTGATACTCATTTGCCTGTGCGGCTTTCAGCAGTCCCGCTGTTTTTT
TGTTGACTATACAGAGAACACAGAGTTAATTCAACAGAGAGCCGGATTCG
ATGTCAAGCTGCAGTGCAATCTCAAAGGTCTGGTCGATGAGAGTATGCTG
AATGACATCAAGATACATTGGTACTTTAAGCAATGCAGCGAAAACAATTG
CCATCAGTTGGGATCTGTGGACGAGTGGACTGCTCTGCCATGTGAGCCGA
GTCTTTGTCGTCCGGAACTCTGGCTCCGGAATGTGACGGAGCGGTATTCG
GGACTGTACAAATGCAGCATTAATCCGCACATTTGGGATAAAGCCCAGGC
TGTGGATGTTCAACTGGTTCGCACCTATCAGCTGGATGTTAAAAACACCT
CATTGGCAGCCCCTGAGTTTGTGGACTCGTATCCCAACAACAAGACCACA
TTGGTGGGCAGTAGGGTGGTGTTCCAGTGCCGTGTTCACAGCGAGGAGCA
TCCCACAATCAAGTGGTTTCGCCGGCAGACGTACGTGGGAACTCAGTCAG
GTGGCGAAGCCTCCTCGGCACCCACAACCTCAAATTTTAGCAACCATATT
GTCCGGTACAATGGTCGAACATATGAACTACTGTCCACCGATCCAGAAAA
GATGATGGCACCCCAGATATATCTCAGCAAATTGATTCTGGACGGAGTGA
GATTACGAGATGCCGGACACTACGCCTGCGTGGCCATCAGCTATCGAGGC
CATAAGATCCGCGAGGCTCTTCCTGGATGTGCTGGCCGATGTGGAGGATA
CGGATCAGGAGAATGAGTACTGGTCGGACTACCGTAATGAAGATGGCGGG
AGTTCCGACTAGCGATCGACGGGAGTTCCTGCTGTCTTCCTTATGCACCT
GGGATTGGCTCTTCTTCCATTGACCGTGTGGTTCAGTTATCTGTTGTACA
ACGTTGCTTCGTGGGACACGGCGATTGCCAGCGAATAAATCCGACGAGGA
TCTGGACACGGAAAGGTGTGTTCCTCGGGGAACAGCATGCAGCCTTTCTA
GACAT
FMO09872.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:08:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31431-RC | 1595 | CG31431-RC | 384..1462 | 2..1080 | 5110 | 98.5 | Plus |
CG31431-RB | 1685 | CG31431-RB | 480..1558 | 2..1080 | 5110 | 98.5 | Plus |
CG31431-RA | 1585 | CG31431-RA | 374..1452 | 2..1080 | 5110 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 21872872..21873499 | 445..1071 | 2780 | 97.9 | Plus |
3R | 32079331 | 3R | 21872582..21872801 | 225..444 | 1085 | 99.5 | Plus |
3R | 32079331 | 3R | 21872407..21872525 | 112..230 | 595 | 100 | Plus |
3R | 32079331 | 3R | 21872028..21872140 | 2..114 | 535 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:07:59 has no hits.
FMO09872.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:00 Download gff for
FMO09872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31431-RA | 370..1459 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:53:43 Download gff for
FMO09872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31431-RA | 373..1462 | 1..1091 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:56 Download gff for
FMO09872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31431-RA | 373..1462 | 1..1091 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:56 Download gff for
FMO09872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 21872027..21872140 | 1..114 | 97 | -> | Plus |
3R | 21872410..21872525 | 115..230 | 100 | -> | Plus |
3R | 21872588..21872801 | 231..444 | 100 | -> | Plus |
3R | 21872872..21873517 | 445..1091 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:53:43 Download gff for
FMO09872.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17698310..17698523 | 231..444 | 100 | -> | Plus |
arm_3R | 17697749..17697862 | 1..114 | 97 | -> | Plus |
arm_3R | 17698132..17698247 | 115..230 | 100 | -> | Plus |
arm_3R | 17698594..17699239 | 445..1091 | 97 | | Plus |