Clone FMO09872 Report

Search the DGRC for FMO09872

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:98
Well:72
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG31431-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09872.5prime Sequence

1105 bp (975 high quality bases) assembled on 2010-10-27

> FMO09872.5prime
CAGTCGACATGGATCCGATGATTTGTGATCTGTGGTCTGGCCGCATTTGG
CTATTGATACTCATTTGCCTGTGCGGCTTTCAGCAGTCCCGCTGTTTTTT
TGTTGACTATACAGAGAACACAGAGTTAATTCAACAGAGAGCCGGATTCG
ATGTCAAGCTGCAGTGCAATCTCAAAGGTCTGGTCGATGAGAGTATGCTG
AATGACATCAAGATACATTGGTACTTTAAGCAATGCAGCGAAAACAATTG
CCATCAGTTGGGATCTGTGGACGAGTGGACTGCTCTGCCATGTGAGCCGA
GTCTTTGTCGTCCGGAACTCTGGCTCCGGAATGTGACGGAGCGGTATTCG
GGACTGTACAAATGCAGCATTAATCCGCACATTTGGGATAAAGCCCAGGC
TGTGGATGTTCAACTGGTTCGCACCTATCAGCTGGATGTTAAAAACACCT
CATTGGCAGCCCCTGAGTTTGTGGACTCGTATCCCAACAACAAGACCACA
TTGGTGGGCAGTAGGGTGGTGTTCCAGTGCCGTGTTCACAGCGAGGAGCA
TCCCACAATCAAGTGGTTTCGCCGGCAGACGTACGTGGGAACTCAGTCAG
GTGGCGAAGCCTCCTCGGCACCCACAACCTCAAATTTTAGCAACCATATT
GTCCGGTACAATGGTCGAACATATGAACTACTGTCCACCGATCCAGAAAA
GATGATGGCACCCCAGATATATCTCAGCAAATTGATTCTGGACGGAGTGA
GATTACGAGATGCCGGACACTACGCCTGCGTGGCCATCAGCTATCGAGGC
CATAAGATCCGCGAGGCTCTTCCTGGATGTGCTGGCCGATGTGGAGGATA
CGGATCAGGAGAATGAGTACTGGTCGGACTACCGTAATGAAGATGGCGGG
AGTTCCGACTAGCGATCGACGGGAGTTCCTGCTGTCTTCCTTATGCACCT
GGGATTGGCTCTTCTTCCATTGACCGTGTGGTTCAGTTATCTGTTGTACA
ACGTTGCTTCGTGGGACACGGCGATTGCCAGCGAATAAATCCGACGAGGA
TCTGGACACGGAAAGGTGTGTTCCTCGGGGAACAGCATGCAGCCTTTCTA
GACAT

FMO09872.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG31431-RC 1595 CG31431-RC 384..1462 2..1080 5110 98.5 Plus
CG31431-RB 1685 CG31431-RB 480..1558 2..1080 5110 98.5 Plus
CG31431-RA 1585 CG31431-RA 374..1452 2..1080 5110 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21872872..21873499 445..1071 2780 97.9 Plus
3R 32079331 3R 21872582..21872801 225..444 1085 99.5 Plus
3R 32079331 3R 21872407..21872525 112..230 595 100 Plus
3R 32079331 3R 21872028..21872140 2..114 535 98.2 Plus
Blast to na_te.dros performed on 2014-11-26 15:07:59 has no hits.

FMO09872.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:00 Download gff for FMO09872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31431-RA 370..1459 1..1091 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:53:43 Download gff for FMO09872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31431-RA 373..1462 1..1091 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:56 Download gff for FMO09872.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31431-RA 373..1462 1..1091 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:56 Download gff for FMO09872.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 21872027..21872140 1..114 97 -> Plus
3R 21872410..21872525 115..230 100 -> Plus
3R 21872588..21872801 231..444 100 -> Plus
3R 21872872..21873517 445..1091 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:53:43 Download gff for FMO09872.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17698310..17698523 231..444 100 -> Plus
arm_3R 17697749..17697862 1..114 97 -> Plus
arm_3R 17698132..17698247 115..230 100 -> Plus
arm_3R 17698594..17699239 445..1091 97   Plus