FMO09873.5prime Sequence
1164 bp (1051 high quality bases) assembled on 2010-10-27
> FMO09873.5prime
CAGTCGACATGGGCAGCGCGCTGGAAAACTATGTGAATCAAGTGCGCACA
CTGAGTGCGTCCGGAAGCTATCGGGAGCTGGCCGAGGAGCTGCCGGAGTC
GCTGTCGCTGCTAGCCCGCAACTGGAGCATTCTGGACAACGTGCTGGAGA
CGCTAGACATGCAGCAGCACTCGCTGGGCGTGCTCTATGTGCTCCTGGCC
AAACTGCACAGTGCGTCCACCGCGAATCCGGAGCCGGTACAACTTATCCA
GCTGATGCGGGACTTTGTGCAGCGCAACAATAACGAGCAGCTGCGCTATG
CGGTGTGCGCCTTTTACGAAACATGCCATCTGTTTACCGAGTTTGTGGTG
CAAAAGAACCTCAGCATCCTGGGCATACGCATCATTTCGCGCGCCATCGA
CCAGATTCGACAGTTGGAAACCCAGTTAACTCCCATACACGCCGATCTCT
GCCTGCTCAGCCTGAAGGCGAAAAACTTCAGTGTGGTGCTGCCGTATCTG
GACGCGGACATCACGGACATCTCCACCGTGGCAGCCGAGTGCAAGACGCA
ACAGCAGCAGCAGTCCCAGCACGCGGATGCCAACAACGATGCCAAGTACT
TCTTGCTGTACTTCTACTACGGCGGCATGATCTACACGGCGGTGAAGAAC
TACGAGCGTGCGTTGTACTTCTTCGAAGTCTGCATCACCACTCCGGCAAT
GGCCATGTCGCACATCATGCTGGAGGCCTACAAAAAATTTCTCATGGTTT
CACTCATCGTCGAAAGCAAGATAGCGTATATACCAAAAAACACACAGGTC
ATTGGTCGTTTTATGAAGCCGATGGGCAATCACTACCACGACCCGGTCAA
TGTGTACGCGAATTCGTCTAGCGAAGAGCTGCGCATTATCATACTCAAGT
ACAGTGAAGCATTTACGCGTGATAACATATGGGACTGGCCAAGCAGGTGG
CTACCTCCTTGTACAAGCGAAACATCAGCGGCTCACTAAAACCTCTGACC
CTTTCCCTGAGCGATGTGCCAGTCGTGTCCAACTTGCAGCGCAGTCGAAG
CAGAGCGTACAATTCCTCAACATGATAAAAATCGGGTGAAATTTATTGCC
AGCATCAATCAAAGGAACGGTATGGGTGTTTGTTCGAGACGATCTGAGAA
AATACACTCACGGG
FMO09873.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:08:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CSN3-RA | 1679 | CG18332-RA | 113..1232 | 9..1125 | 5255 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20840725..20840988 | 576..313 | 1320 | 100 | Minus |
| 3L | 28110227 | 3L | 20841048..20841297 | 312..63 | 1250 | 100 | Minus |
| 3L | 28110227 | 3L | 20840473..20840668 | 770..575 | 965 | 99.5 | Minus |
| 3L | 28110227 | 3L | 20840224..20840403 | 947..769 | 820 | 98.3 | Minus |
| 3L | 28110227 | 3L | 20839781..20839899 | 1058..945 | 365 | 95 | Minus |
| 3L | 28110227 | 3L | 20841409..20841464 | 64..9 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:08:38 has no hits.
FMO09873.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:06 Download gff for
FMO09873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN3-RA | 112..1239 | 9..1135 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:54:02 Download gff for
FMO09873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN3-RA | 113..1240 | 9..1135 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:15 Download gff for
FMO09873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CSN3-RA | 113..1240 | 9..1135 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:15 Download gff for
FMO09873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20841048..20841296 | 64..312 | 100 | <- | Minus |
| 3L | 20841410..20841464 | 9..63 | 100 | | Minus |
| 3L | 20840473..20840667 | 576..770 | 99 | <- | Minus |
| 3L | 20840726..20840988 | 313..575 | 100 | <- | Minus |
| 3L | 20839766..20839897 | 947..1074 | 94 | <- | Minus |
| 3L | 20840225..20840401 | 771..946 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:54:02 Download gff for
FMO09873.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20832866..20832997 | 947..1074 | 94 | <- | Minus |
| arm_3L | 20833325..20833501 | 771..946 | 98 | <- | Minus |
| arm_3L | 20833573..20833767 | 576..770 | 99 | <- | Minus |
| arm_3L | 20833826..20834088 | 313..575 | 100 | <- | Minus |
| arm_3L | 20834148..20834396 | 64..312 | 100 | <- | Minus |
| arm_3L | 20834510..20834564 | 9..63 | 100 | | Minus |
