FMO09874.5prime Sequence
782 bp (782 high quality bases) assembled on 2010-10-27
> FMO09874.5prime
CAGTCGACATGTCGATGAGCAATTTATCAATAGACGGCGAGTTCCGCTAC
ATAATTCAGTGGTTCAACGAGTGGAGTGAACTGCAGCGGGATGACTTTGT
CTACGTTTTCGTGGAGTACCTGGCCAGGGGATCCAGTTCTGGCGCCAGCG
ATGGCCAGGTGAATGGATTGGTCAACTCGCTGGCCAACGCAGCAGTGCAG
GACAAGCCCATGAGCCTGTTCCAATGCCGCATTAAGCTGTTCCGTGAATG
GAGCCCCAAGTGGCCGATCGAGTTCAAATGCAAGCTGCAGGAGAAGATCA
GTGAGATCGACGCGAAGGTGGGGGAGAAGATCATCAATGAGCTTCGGGGG
CCCCATTCCGTGCACAATGGCGACGTAGCCGTACATTTAAATGCAAATGG
AGCGAGCGAAGAGGGCGGAGACTCCGAACTGGAGCAGATGCCAGAGTCAG
AAGTGACGGAGGTCGCCACTTTGGCGGCGGGGCAAGAAGCTGATCCAGCT
CCCGAAGCAGATGACAATCGCTTGGCGGCGGTCTTAAGCCAAGAAACGCC
CGTTGATGACGACGACGTGGAAAAGTCTGCCGGTGAAGATTGCAATAGTA
ATGCCGATGTAAATGGCCATTATCCAGCGGCTGCAGTGACAACGATTGCG
GTGAATATATCACCATCGCCATCCCCCACTCCCCAGCCGATTGTTGAACC
TGTAGAACAGGTCGAGAATAGCGTTACAGTCACCGTGGCTTCTCCAGAAG
TTCCCCCCGTGGCTGCAAGCTTTCTAGACCAT
FMO09874.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12948-RB | 1519 | CG12948-RB | 476..1231 | 9..764 | 3765 | 99.9 | Plus |
| CG12948-RA | 1281 | CG12948-RA | 238..993 | 9..764 | 3765 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9746455..9746988 | 764..231 | 2670 | 100 | Minus |
| 3R | 32079331 | 3R | 9747048..9747269 | 230..9 | 1095 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:08:42 has no hits.
FMO09874.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:06 Download gff for
FMO09874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12948-RA | 256..1024 | 1..770 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:54:04 Download gff for
FMO09874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12948-RA | 256..1024 | 1..770 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:18 Download gff for
FMO09874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12948-RA | 230..998 | 1..770 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:18 Download gff for
FMO09874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9746450..9746988 | 231..770 | 99 | <- | Minus |
| 3R | 9747048..9747276 | 1..230 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:54:04 Download gff for
FMO09874.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5572172..5572710 | 231..770 | 99 | <- | Minus |
| arm_3R | 5572770..5572998 | 1..230 | 97 | | Minus |
