FMO09875.5prime Sequence
1113 bp (985 high quality bases) assembled on 2010-10-27
> FMO09875.5prime
CAGTCGACATGACGCGACCCAAACAGGATGGCGGCAAGTTCAAGGCCTTC
ATGCAGGAGAATGTCCTTACCATGGCCACCGTTATCGGTGTGTTTGTGGG
TGGACTCATCGGCTTCATCATCAAAAATAGCACTGGCGAGTGGTCGAAGA
GAGAGATCATGTACATATCCTTCCCCGGCGAGATTTTCTTGCGAATGCTT
AAATGTTTGATTGTGCCGCTTTTGGTCTCATCAATCACCAGTGCCATTGG
TGGACTCGACCTGAGCATGTCCAGCAAGATTGCTACCAGAGCCATTACTT
ACTACTTTGTGACCACCATATCGGCCGTGATTCTGGGAATATGTCTGGTG
ACCACACTGCGTCCCGGCCAGGGAGCCAAGATCGTGGAGACCCAGACGGA
GAGCATTGATAAGGCATCGAAGGTGCTCACCCCAGACACGCTTATGGATT
TGGTGCGAAACATGTTCACGGACAACATCATTCAGTCGACCATGTTCCAG
CACCGCACTGAGATCTATGAGAACACTAGCATTAGCCCAGCACAGCCTAT
GGAAAACTGGGAGTTCAAGTCGGCTCAGCGCGAGGGTTCTAATGTCCTGG
GTCTTGTGATGTTCAGTGTTATCCTAGGTACCACCATTGGAAGAATGCGG
GAGAAGGGACAACTGCTGCAGGATTTCTTCACCACACTGAGCGAGGCAAT
GATGACCATCACCTCATGGGTTATTTGGATTTCCCCGCTGGGTGTTGCCT
TTCTGATAGCCGCCCAGATCATTGAGATGGAATCGATAGCAGCAACGATT
CAGTCATTAGGATGGTATTTCATAACGGTCATGATAGGTCTATTCCTTCA
CGGTTTTGGTACGACTGCGGTGATCTTCTTCCTGGGCACCCGACGTCTCC
CGTACCGCTATATTGCCAAGCTTAGTCAGGTCCTGCAACTGCATTTGGAA
CAGGTTCCAGCTCGGCCACCATGCTGCTGATCATCAACTGTTTGGACAAC
ATGGCATCGATCCGCGGGTACTCGAATTTGTCATTCCTTGTTGGTGCCAC
ATTAACATGAACGTCCGGCTCTCTAATGAGCTGTGCTGCCTCTGTCATCC
GCCCATACGTGAA
FMO09875.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:08:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Eaat1-RD | 2984 | CG3747-RD | 381..1481 | 8..1105 | 5085 | 98.1 | Plus |
| Eaat1-RC | 2878 | CG3747-RC | 275..1375 | 8..1105 | 5085 | 98.1 | Plus |
| Eaat1-RA | 3012 | CG3747-RA | 409..1509 | 8..1105 | 5085 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9338154..9338339 | 8..193 | 930 | 100 | Plus |
| 2L | 23513712 | 2L | 9339620..9339804 | 544..728 | 925 | 100 | Plus |
| 2L | 23513712 | 2L | 9338583..9338755 | 285..457 | 865 | 100 | Plus |
| 2L | 23513712 | 2L | 9340058..9340252 | 858..1051 | 680 | 93.4 | Plus |
| 2L | 23513712 | 2L | 9339865..9339999 | 727..861 | 660 | 99.3 | Plus |
| 2L | 23513712 | 2L | 9338425..9338521 | 193..289 | 485 | 100 | Plus |
| 2L | 23513712 | 2L | 9339512..9339556 | 499..543 | 225 | 100 | Plus |
| 2L | 23513712 | 2L | 9338817..9338860 | 457..500 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:08:46 has no hits.
FMO09875.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:07 Download gff for
FMO09875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eaat1-RC | 265..1341 | 1..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:54:07 Download gff for
FMO09875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eaat1-RA | 403..1479 | 1..1075 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:19 Download gff for
FMO09875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Eaat1-RA | 403..1479 | 1..1075 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:19 Download gff for
FMO09875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9339620..9339803 | 544..727 | 100 | -> | Plus |
| 2L | 9339866..9339996 | 728..858 | 99 | -> | Plus |
| 2L | 9340059..9340278 | 859..1075 | 93 | | Plus |
| 2L | 9338148..9338339 | 1..193 | 97 | -> | Plus |
| 2L | 9338426..9338521 | 194..289 | 100 | -> | Plus |
| 2L | 9338588..9338755 | 290..457 | 100 | -> | Plus |
| 2L | 9338818..9338860 | 458..500 | 100 | -> | Plus |
| 2L | 9339514..9339556 | 501..543 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:54:07 Download gff for
FMO09875.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9338148..9338339 | 1..193 | 97 | -> | Plus |
| arm_2L | 9338426..9338521 | 194..289 | 100 | -> | Plus |
| arm_2L | 9338588..9338755 | 290..457 | 100 | -> | Plus |
| arm_2L | 9338818..9338860 | 458..500 | 100 | -> | Plus |
| arm_2L | 9339514..9339556 | 501..543 | 100 | -> | Plus |
| arm_2L | 9339620..9339803 | 544..727 | 100 | -> | Plus |
| arm_2L | 9339866..9339996 | 728..858 | 99 | -> | Plus |
| arm_2L | 9340059..9340278 | 859..1075 | 93 | | Plus |
