FMO09876.5prime Sequence
1144 bp (1026 high quality bases) assembled on 2010-10-27
> FMO09876.5prime
CAGTCGACATGGATTTGTATGACGGCATTGATACGAGGGCTCGATCTAGC
CAGATTGATGGATGGTCTTCGGGAATAAAAATGTTACAGACCCAGCTGGC
AGTAAAAATGGCTGTCAAAAAACCACTTATGACGCCAGTGGTTAATCTAA
GGTCCAAACGCCTTGCAGATCCAGAAGTTACATGTTTTGCTCCAATTACT
ACAGTTGTATCCAAACCATTAATAAGTGGTAAAGCCCTTCCATCCATACT
GGAAAGGATAAACAGGGGGGACTGGGACGTTGCCGATGAATACGATCCTC
AAAGGCCAAATGAATATGAAAAACTTAAAGAGAAAAGTAATGGCAGTGAC
AAAAATCGAGCAGGCGTAAGTGATCGAGAAGACCGAGATGACAAAGAAAA
AGATCGTAAACGTGGACGCGTCGGTCGTCGAGAATTTTATAGAGACGAAG
TCTCAGCCCCTAACCTGAAGCTCAGCGGGTTTGGCCACCGGCAAAACGAT
GATGACATGTACTTGCCATCTCCGGGCCTTGTAGCTAAACAGGGAGGTGC
CACAATCGCTCCCCCTCCTTCCCTCCAAGAAATGTCCATTGATAGTGGTT
GTGAAGCCACTAATACTATGCCATATTCTGCCAGCTCGGTGGCCGCCAAA
ATTATGGCAAAATATGGGTTTAAGGATGGTCAAGGTCTCGGAAAATCGGA
GCAGGGCATGGCCATAGCTCTTCAAGTAGAGAAAACCTCCAAACGTGGTG
GACGGATCATACACGAAAAAGACGTTTTTCTGCCACCCCTAGCATTGTCG
CCACCTTCTATTGGCTCCCAAATAGGAACAAGTCCCAGCCACAACGCCAT
GCCTCCTCCCCAGATGGTAGACACGGCGGCTGAGAGTGGTGACATCGGAT
ACAGCATTACGAGATTATGAAATCACCAAGCAAGGTTGTTCTTCTACGCA
ACATGGTAGGACCCGGGGACGTTGACGAAGAATTGTAACCCGAGGTAAAG
ACGAATGCACATCAGTACGGGAAGTGAACAGTGTATCATTCACGATCGTT
CGGACTGGTGCCGAGATGCAGTAAATATTCGTAAGTTAGCGATCGAATGC
AATAGCCTGATGAACTATGGACGTTCTGAGAGCTCAGTGCGACG
FMO09876.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:08:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spf45-RA | 1397 | CG17540-RA | 71..1156 | 9..1083 | 5075 | 98.5 | Plus |
| Spf45-RC | 1257 | CG17540-RC | 48..1016 | 126..1083 | 4490 | 98.4 | Plus |
| Spf45-RB | 1354 | CG17540-RB | 188..1113 | 169..1083 | 4275 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:08:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 23067259..23068144 | 1009..126 | 4300 | 99.5 | Minus |
| 2L | 23513712 | 2L | 23068200..23068316 | 125..9 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:08:50 has no hits.
FMO09876.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:07 Download gff for
FMO09876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spf45-RA | 128..1222 | 3..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:54:09 Download gff for
FMO09876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spf45-RA | 67..1161 | 3..1087 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:22 Download gff for
FMO09876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spf45-RA | 67..1161 | 3..1087 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:22 Download gff for
FMO09876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 23067191..23068144 | 126..1070 | 98 | <- | Minus |
| 2L | 23068200..23068320 | 3..125 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:54:09 Download gff for
FMO09876.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22959923..22960876 | 126..1070 | 98 | <- | Minus |
| arm_2L | 22960932..22961052 | 3..125 | 97 | | Minus |
