Clone FMO09880 Report

Search the DGRC for FMO09880

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:98
Well:80
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9117-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO09880.5prime Sequence

710 bp (710 high quality bases) assembled on 2010-10-27

> FMO09880.5prime
CAGTCGACATGGCATACACTGATCCTGCGCAACGAAACCAGGTGACCGTG
CTCCAGGTCGGCTATTCTCGCCAAGAAGAAGGAGACGAGTCCGCCATGCG
GGCTAACTGCACATGCACACTGGTCCGCTGCCGGGATGGCACCAACATAA
TCGTGGACACACTGACGGCCTGGGATGGAGATCACCTGCGTTCGTTGTTG
GGCCAGCAGGGACTAGGCGTCGATGACATCCACGTGGTGGTCTGCTCTCA
CGGACACTCTGACCACATCGGTTGCAACTATCTGTTTCAGAAGGCACGAA
TGCATTTGGTCGGCGCATGTGCCTCACATCACGACCTCTACATGGACCAC
CTTGGTAGTGGTAATCCAGACGAGCAACTGGCCCTAGATTCGAATGCCGA
GGTGGTAGTGAGGCGGTCGCCAGGACACACCCTCAGCTGCGTTTCAGTTC
TTGTGGAAAATTCCCAGCTGGGTGGACGGGTCGGTATCACCGGAGATCTC
TTCGAGCGTCGCGAGGACATCGACGATGAGAACATTTGGATGGACGCTGG
AAGCGAAAACGAGAAGGTGCAGCGCGAGGAGCGCAGTAAAATGGCACAAC
TGTGCGAGTTTATAATCCCAGGACATGGTCCGATGTTTTCTGTCACACAA
TCAATGCGCTGTAAACTTAAAGAAGACGCCACTTCTAACACTGCAAGCTT
TCTAGACCAT

FMO09880.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9117-RA 906 CG9117-RA 88..771 9..692 3420 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:09:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6037132..6037815 692..9 3420 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:09:06 has no hits.

FMO09880.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:09 Download gff for FMO09880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9117-RA 88..777 9..701 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:54:15 Download gff for FMO09880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9117-RA 88..777 9..701 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:29 Download gff for FMO09880.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9117-RA 88..777 9..701 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:29 Download gff for FMO09880.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6037126..6037815 9..701 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:54:15 Download gff for FMO09880.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6037126..6037815 9..701 99   Minus