FMO09881.5prime Sequence
1126 bp (969 high quality bases) assembled on 2010-10-27
> FMO09881.5prime
CAGTCGACATGTCATTTGTGGAAATATGTCTCGTCCTGGCTACCATCGGC
TTACTATTGTTCAAGTGGAGTACTGGCACCTTTAAGGCTTTCGAAGGGCG
AAACCTATACTTCGAGAAACCGTACCCATTTTTAGGTAACATGGCTGCAT
CGGCCTTGCAAAAAGCCTCATTCCAAAAACAAATCTCCGAGTTCTATAAT
CGCACTCGACATCACAAACTGGTAGGGCTCTTTAATCTACGCACCCCAAT
GATCCAGATAAACGACCCCCAGCTGATTAAAAAGATATGCGTTAAGGACT
TTGACCACTTTCCCAACCACCAGACACTGAATATCCCTAACGAGCGTCTA
GTTAACGACATGCTCAATGTGATGAGGGATCAGCACTGGAGGAACATGAG
GAGCGTCCTGACCCCGGTCTTCACGTCGGCCAAGATGCGAAACATGTTCA
CCCTGATGAACGAGAGCTTCGCTCAATGCCTGGAGCACCTGAAATCCTCC
CAGCCTATTGCTGCAGGTGAAAATGCCTTTGAGCTGGACATGAAAGTGCT
TTGCAACAAGCTTTCCAACGACGTGATTGCAACAACAGCTTTTGGACTAA
AGGTTAACTCATTCGATGACCCAGAGAATGAGTTCCATACGATCGGGAAA
ACCCTAGCTTTCTCACGGGGTCTTCCGTTCCTAAAGTTCATGATGTGCTT
ACTTGCTCCGAAAGTTTTTAATTTTTTCAAGCTGACTATCTTTGACTCCA
CCAATGTTGAGTACTTTGTACGCCTGGTGGTGGATGCTATGCAGTACCGG
GAGAAACACAATATCACCAGGCCCGACATGATCCAGCTTCTGATGGAGGC
GCGAAGGAGTCGAAAGACAACTGGACGGACGATGAGATCGTGGCTCAGTG
CTTCATTTTCGTCTTCGTGCCTTCGAAAACAACTCCAATCTGATCTGTAC
CACCGCCTACGAACTGCTTCGACGTCTCGACATCAGGCGGCCTTATATGA
AGAGGTTAGGAAACCCAAGAAGGCACTAAAGGGTGCCCCCCCTCCTCGAC
GAACGCCGCGAGGAGAATGACCTACATGGACATGTCATCTCGAATCCTTC
GAAGTGGACCCTTCGCAGCACGAACC
FMO09881.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:09:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp9b1-RA | 1752 | CG4485-RA | 32..1141 | 9..1113 | 4990 | 97.4 | Plus |
| Cyp9b2-RA | 1667 | CG4486-RA | 150..1156 | 108..1109 | 1665 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:09:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7129003..7129510 | 722..215 | 2540 | 100 | Minus |
| 2R | 25286936 | 2R | 7128619..7128940 | 1041..723 | 1190 | 93.5 | Minus |
| 2R | 25286936 | 2R | 7129572..7129777 | 214..9 | 1030 | 100 | Minus |
| 2R | 25286936 | 2R | 7131338..7131819 | 696..215 | 745 | 77 | Minus |
| 2R | 25286936 | 2R | 7130991..7131238 | 969..724 | 720 | 87.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:09:10 has no hits.
FMO09881.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:10 Download gff for
FMO09881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9b1-RA | 31..1156 | 9..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:54:17 Download gff for
FMO09881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9b1-RA | 32..1157 | 9..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:32 Download gff for
FMO09881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp9b1-RA | 32..1157 | 9..1126 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:32 Download gff for
FMO09881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7128529..7128940 | 723..1126 | 91 | <- | Minus |
| 2R | 7129003..7129510 | 215..722 | 100 | <- | Minus |
| 2R | 7129572..7129777 | 9..214 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:54:17 Download gff for
FMO09881.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3016034..3016445 | 723..1126 | 91 | <- | Minus |
| arm_2R | 3016508..3017015 | 215..722 | 100 | <- | Minus |
| arm_2R | 3017077..3017282 | 9..214 | 100 | | Minus |
