FMO09884.5prime Sequence
1119 bp (957 high quality bases) assembled on 2010-10-27
> FMO09884.5prime
CAGTCGACATGACAAACTTTCTGGATCAATTGCCCAAGCATATCAGAGAA
ATCGCCGAGCAGGTTAATGTTCTCGCACCGGAGGAGGTGCTGACAACTCC
CAAGGTGCGATTCCTGGACACCCGCCAGCAATCGCTGCACACAATCGTGC
GAAAATGCACTCCGGATGATGTTAGGGTGCTCAAGGATGCGGCAGCCAAG
TGGCTGGCAGAGATGCCCCAGTCAGCGGATTCCCTCTTCAAGCCGCTTGT
CAATGTTAGATGGTCGCGGGTGTCGTTTGGATGTTCCGCTTTAGATCGCT
GCACGGGCGGGGGAGTGGTCACTCGTGGAATTACAGAGCTATGTGGAGCA
GCCGGCGTGGGCAAGACCCAGTTGCTTCTTCAGCTATCCCTTTGTGTCCA
GCTACCCCGTGAGTTGGGTGGCTTGGGCAAAGGCGTGGCCTACATATGCA
CGGAGAGTTCCTTTCCGGCGAGAAGATTGCTGCAGATGAGCAAAGCCTGC
GAGAAGAGGCATCCCGAAATGGAGCTGAATTTTCTGGGAAACATCTTTGT
GGAAAATCACATTGAGGCAGAACCTCTCCTGGCGTGCGTTATAAACCGCA
TTCCGCGACTGATGCAACAACATGGCATTGGCCTGATCATTATTGATTCT
GTGGCCGCCATATTCCGGCTGTATAATGATTATCTGGAACGAGCGAGACA
TATGCGTCGACTGGCAGACGCTCTGCTCAGCTACGCGGATAAGTACAACT
GTGCCGTGGTCTGTGTGAATCAGTGGCCACCAGGGACGGTCACGATGAGA
TTCCCTGCTTGGGATTGCAGTGGGCGCACCTAGGACGCACTAGACTGCGT
GTTTCCCGGCTGCCCAAGCAGCATCGCATGCGTGATCAACTGATAACGGT
GCGCAAACTGGAACTCCTTTACTCACCACAGACTCCCAATGATTTCGCCG
AGTTTCTTATAACCGCAGAAGGGTGGTCATGTTCCCGAGCCATCTTGTTC
CCAGCCCACCCGCCAAATGGGGTCGACTGGCAAGCTTTCTAGAACAATCG
TCGCGCGCGGGTCAGGTAATGGTCTAATCTATCTTATCATAATCTAATCA
AACGTAGCCTAAGGAATCT
FMO09884.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spn-B-RA | 1384 | CG3325-RA | 161..1183 | 9..1029 | 4855 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:08:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14328946..14329407 | 570..1029 | 1950 | 96.8 | Plus |
| 3R | 32079331 | 3R | 14328546..14328893 | 223..570 | 1740 | 100 | Plus |
| 3R | 32079331 | 3R | 14328325..14328494 | 63..232 | 820 | 98.8 | Plus |
| 3R | 32079331 | 3R | 14328211..14328269 | 9..67 | 280 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:08:35 has no hits.
FMO09884.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:05 Download gff for
FMO09884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-B-RA | 141..1170 | 1..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:54:01 Download gff for
FMO09884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-B-RA | 154..1183 | 1..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:14 Download gff for
FMO09884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-B-RA | 154..1183 | 1..1029 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:14 Download gff for
FMO09884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14328204..14328265 | 1..63 | 95 | -> | Plus |
| 3R | 14328326..14328487 | 64..225 | 100 | -> | Plus |
| 3R | 14328549..14328892 | 226..569 | 100 | -> | Plus |
| 3R | 14328946..14329407 | 570..1029 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:54:01 Download gff for
FMO09884.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10153926..10153987 | 1..63 | 95 | -> | Plus |
| arm_3R | 10154048..10154209 | 64..225 | 100 | -> | Plus |
| arm_3R | 10154271..10154614 | 226..569 | 100 | -> | Plus |
| arm_3R | 10154668..10155129 | 570..1029 | 96 | | Plus |
