FMO09885.5prime Sequence
1127 bp (1000 high quality bases) assembled on 2010-10-27
> FMO09885.5prime
CAGTCGACATGACGGCAACCAAGCAGCAAGAGGCTGAGGCCGAACATGAT
CCCCAAGTGGTGGTCACCCCTGGAGACGCCTCTCGCAGCTCTCGCCAAGA
TCGGGGTCTATGGCGGGATCTTACTTCCTACTGGATCCTCGGTCTGTGCA
ACAACTACGGATACGTGGTGATGCTGAGTGCTGCGCACGATATTATCAAG
CAGTTTAATCCGAATGATGAATCGGAAGAAAGCTCGTCGGGAAGAAACTG
TCACTTGGTTTCAACAGGTGCCATCTTGCTGGCAGACGTGCTGCCCTCAT
TATTTGTCAAGATTCTAATGCCATTCTTTCCATTTTGGGTGAATTTCCGT
ATAGCTCTTGCCGTGGCCTTTTCTGCAGCTGGTTTCCTCCTGGTTGGATT
CGCCAATGCCGAATGGATGGCTCTTTTGGGTGTCATCATCACTTCGGCTA
GCAGCGGAATAGGAGAAACCACTTTCTTGGCCTATTCTTCGCGATACAAT
AAGAATGTGATCTCCACTTGGTCGTCCGGAACTGGTGGCGCTGGAGTTAT
CGGATCCTTGAGCTATGCTAGCTTGAGATCCTTAGACTTCAGTCCCAGAG
ATACTATGCTGATTATGCTGATCTTCCCTGCGATCGAGGCCTTTGCATTC
TGGTTGCTGCTTCGTCGTCCACAAGTTGATATATTGCCGGTTACCACGGT
TGAGTCCACGGAAGTCCTGATCAGCGATGAGAAGCCATTAGTTGGGTTCA
AGGAAAAGCTCTTCTATATCAAGCACCTCTTCAAATATATGTTGCCCCTT
TGCCTGGTTTACTTCTTCGAATACTTCCATCAATCAAGGATTGTTCGAAC
TGGTTTACTTTGAAGATATATTCCTGGACAAGGACTCGCAGTACCGCTGG
CTAAATGTGGACTATCAGATCGGAGTCTTTATCTCGCGCCCCTCTGTCAA
TCTCTTCCAGCTGGACAGATCTGGCTGATGTCCATCTTCCAGTTCGTCAA
CGTGGTATTACTTCCTAACCGAGTATCTGGTGTACACGCCTAGCATTCTG
ATCGGTGTTCGCCATCCGTCCTGTGGGAGGACTTCTGGGCGGCGGGGGCC
TACGTGAACACTTTATTCGATGTCAAA
FMO09885.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cln3-RB | 1589 | CG5582-RB | 107..1209 | 9..1111 | 5195 | 98.6 | Plus |
| cln3-RA | 1553 | CG5582-RA | 71..1173 | 9..1111 | 5195 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17809937..17810276 | 843..503 | 1655 | 99.7 | Minus |
| 3L | 28110227 | 3L | 17810786..17810989 | 212..9 | 1020 | 100 | Minus |
| 3L | 28110227 | 3L | 17809626..17809880 | 1095..843 | 850 | 95 | Minus |
| 3L | 28110227 | 3L | 17810335..17810494 | 503..344 | 800 | 100 | Minus |
| 3L | 28110227 | 3L | 17810583..17810714 | 343..212 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:09:13 has no hits.
FMO09885.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:11 Download gff for
FMO09885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cln3-RA | 54..1168 | 1..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:54:19 Download gff for
FMO09885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cln3-RA | 62..1176 | 1..1114 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:34 Download gff for
FMO09885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cln3-RA | 62..1176 | 1..1114 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:34 Download gff for
FMO09885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17809608..17809879 | 844..1114 | 94 | <- | Minus |
| 3L | 17809937..17810276 | 503..843 | 99 | <- | Minus |
| 3L | 17810336..17810494 | 344..502 | 100 | <- | Minus |
| 3L | 17810583..17810713 | 213..343 | 100 | <- | Minus |
| 3L | 17810786..17810995 | 1..212 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:54:19 Download gff for
FMO09885.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17802708..17802979 | 844..1114 | 94 | <- | Minus |
| arm_3L | 17803037..17803376 | 503..843 | 99 | <- | Minus |
| arm_3L | 17803436..17803594 | 344..502 | 100 | <- | Minus |
| arm_3L | 17803683..17803813 | 213..343 | 100 | <- | Minus |
| arm_3L | 17803886..17804095 | 1..212 | 98 | | Minus |
