FMO09889.5prime Sequence
1130 bp (1003 high quality bases) assembled on 2010-10-27
> FMO09889.5prime
CAGTCGACATGTTTGCCACGCCCCTCAGACAGCCAGCTGCGGCTAACCAC
CAGACCCCAAAGAATTCCGCCGGCATGGATGAGCATGGTAAGCCGTATCA
GTACGAGATTACCGATCACGGATACGGCAAGGATGCGGTCAAGGTGCTGC
ATGTCAGCCGCAACGGACCCGTGCACGCCATCCAGGAATTCGAGGTGGGC
ACTCACCTGAAGTTGTACAGCAAAAAGGATTACTACCAGGGCAACAACTC
GGACATCGTGGCCACCGATTCGCAGAAGAACACCGTCTATTTGCTGGCGA
AAAAGCATGGCATTGAAAGTCCCGAGAAGTTTGCTCTGCTCCTGGCCAGG
CACTTTATTAACAAATACTCGCACGTGGAGGAGGCGCACGTTCATGTGGA
GGCGTATCCCTGGCAGCGAGTTTGCCAGGAGGAGACCAGGACCAACGTCA
ATGGGAAGTGCGAGAACGGAGTCCAAGGGAACTGCGACTTCAGCTCCATT
GACAACAGATCACTGCACAATCACGCTTTTATATTCACGCCCACCGCTCT
TCACTACTGCGATGTGGTTATAAGGAGAACAGATCCCAAACAAACGGTCA
TCACGGGCATCAAGGGTCTCCGGGTGCTGAAGACGACCCAATCCTCGTTC
GTGAACTTCGTGAACGATGAGTTCAGATCTCTGCCAGATCAGTATGATCG
CATCTTTAGCACCGTGGTGGATTGCTCCTGGGAGTACTCCGATACCGAGA
ACTTGGACTTCCTCAGGGCCTGGCAAACGGTCAAAAACATAATCATTCGT
AACTTTGCTGGCGATCCGCAGGTGGGCGTGTCCTCGCCCTCCGTTCAGCA
CACCCTGTATCTGAGTGAAAGACAGGTCCTGGATGTCCTGCCGCAGTGTC
GGTCATTTCGATGACCATGCCAAACAAGCACTACTCAACTTCGATACGAA
GCCCTTCAGAAGATTGCACCCCGGCGACAACAATGAAGTTTCCATCCCAG
TGGACAAGCCACATGGCACCATCTATGCCCAATTGGTCCGGAAAAAATCA
TGTCACTGCAGCTTCAAACATCGTGCCGGCAGTATGCTACATCTATCTAT
CATCATGCTAGATCGTGAGCTGATCGTAAC
FMO09889.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:09:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Uro-RA | 1262 | CG7171-RA | 34..1070 | 9..1043 | 5060 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7780118..7780691 | 9..582 | 2870 | 100 | Plus |
| 2L | 23513712 | 2L | 7780759..7781223 | 581..1043 | 2100 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:09:25 has no hits.
FMO09889.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:12 Download gff for
FMO09889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uro-RA | 26..1086 | 1..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:54:27 Download gff for
FMO09889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uro-RA | 26..1086 | 1..1056 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:39 Download gff for
FMO09889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Uro-RA | 26..1086 | 1..1056 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:39 Download gff for
FMO09889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7780110..7780691 | 1..582 | 99 | -> | Plus |
| 2L | 7780761..7781239 | 583..1056 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:54:27 Download gff for
FMO09889.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7780110..7780691 | 1..582 | 99 | -> | Plus |
| arm_2L | 7780761..7781239 | 583..1056 | 97 | | Plus |
