FMO09893.5prime Sequence
1134 bp (981 high quality bases) assembled on 2010-10-27
> FMO09893.5prime
GGGCTCTTATCAGTCGACATGAAGGTGTTCCGACTGCGTCTGGTCAAGCT
GCTGCTGCTCGGATTTCTGCTGGCCAATCTGGTGTTTCTCTATTACACGT
GGAACACGCTGCTCTGGCGGCGGATAAGTAGGGCTCTGTCCGGTGAATCT
CAGCCGGCAGAGGAACCGCCAAAGGCCGCCAAGCTGTCGCCCAAGGAGAA
GCTGCGCAATGCCAACAAACACATACGCAAGTCCATCACCATCGTGTTCT
ATGGCCACTACAACTTTGAGCAGGATCTGAAGGCATCGATCGACAGCATC
CTGGACGTGATACCCAACATGCCCATCCTGGTGCTTCAGGATGGCGGTGC
CGAGTACGCCTATCCGCCGGTCAACTACGAACGGAACCTAACCGCCGGCG
AGGAGCGCACCGTGCTATTCCAGAGTCTGTCCTTCGATGTGCGGCGAACG
CGGCAGGAGCTGAATCCCTTGGCGTCCATTCGGACCAAATACGCTCTCAT
CATGCCGGACGGCGTGCGGCTGAACAGCAAGAACATCCTGCAGAAGATTC
TGCGCGAGATCAACTCCATGGGCCTGCCGGGTCAGCCCAAGGAGCAGCGA
CCTCCAGTGCCGCCGGAGCAGTTGGTGCGACGCATGGTGCTAGTACCCTT
CGCCGGCAATCTGAAGTCCTTCAGCAGCTGCGTCAAGATGAACCTGGATT
TGCCCGACTGGACACTGGAGCTGGTGGCAACCAACGATACGAGACGATGT
GATTTGTTCCTGCAGAAGCACGCAATCCTGTTGGATGCAGCTGCTCTGGC
AGCCATGCCCGAGCCCTTCTCCCTGCCCTTTCCGGAAATGCTCTACATGC
ACGCAAGATAGCCAATCTCTCGACCACGGTGTTCCCGCAAGCCTTTCAAG
AGGGACGGCGTCTATTCGCCTCCTTTCACACCAAACAGCGGAGGATGGAC
CTGCGCCGTCGGCAGTTCCGCGCGATGTACAAGAAACTGCAGATCAAGCG
GATCGTGAGAAGGCATAAAGAGTGCCAGAAAGCTCAGCCCGGAAGTTGCG
GTCAGGTCACGCTTGTCCTGGATGGTCAGTTCTCGTTCCTCGAAACCTCG
CTGCCTTGATATCACCGAATCGCATCTGTTCGCT
FMO09893.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:09:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15651-RA | 2547 | CG15651-RA | 294..1421 | 14..1132 | 5135 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:09:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20985465..20986207 | 756..14 | 3700 | 99.9 | Minus |
| 2R | 25286936 | 2R | 20985075..20985232 | 1028..872 | 695 | 97.5 | Minus |
| 2R | 25286936 | 2R | 20985289..20985406 | 872..756 | 525 | 98.3 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:09:36 has no hits.
FMO09893.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:14 Download gff for
FMO09893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15651-RA | 286..1402 | 11..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:54:32 Download gff for
FMO09893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15651-RA | 291..1407 | 11..1118 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:50:44 Download gff for
FMO09893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15651-RA | 291..1407 | 11..1118 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:50:44 Download gff for
FMO09893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20984978..20985231 | 873..1118 | 92 | <- | Minus |
| 2R | 20985289..20985405 | 757..872 | 98 | <- | Minus |
| 2R | 20985465..20986210 | 11..756 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:54:32 Download gff for
FMO09893.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16872483..16872736 | 873..1118 | 92 | <- | Minus |
| arm_2R | 16872794..16872910 | 757..872 | 98 | <- | Minus |
| arm_2R | 16872970..16873715 | 11..756 | 99 | | Minus |
