FMO10002.5prime Sequence
862 bp (862 high quality bases) assembled on 2010-10-30
> FMO10002.5prime
CAGTCGACATGGCCCTCAATGTCGATCATAAGATGCGTTTCCGCTCCAAG
AAGGGTCAGCTGCCGTTCATCGAGCTGAATGGGGAGGAAATCGCCGATTC
GGCCATCATCATCAAGGAACTGTCGTCCAAATACGAGAAGTACCTGGACT
CGGGACTCACCGCCGAGCAAAGGAATGTCTCGTACGCCACGATTGCCATG
CTGGAGAACCATCTCATCTGGATCATCTTCTACTGGCGCGCCAAGTATCC
GGACAATGTGCTCAAGGGCTACAAGGTCAACTTGCAGCACGCCCTCGGCC
TGCGGCTGCCCAACTCGATTCTGAACTTCTTCTTTAAGATCACCTTTGGT
CGCAAGGGCACGAAGAAGCTGAAGGCGCACGGCATCGGTGTCCACAGCGC
CGAGGAGATCGAGGAGTTCGGCAAGGACGACCTGAAGGTGCTCAGCGAGA
TGCTCGACTGCAAGCCTTTCTTCTTCGGCGACGAGCCCACCACCCTGGAT
GTGGTGGCCTTCGCTGTCCTCTCGCAGCTCCACTATCTGTCCAAGGACAT
TGCGTATCCGCTGCGCGACTACATGACCGAGAAGTGCCCCAACTTGATTG
GCCACGTATCTCGCATGAAGGACAAGTGCTTCCCCGACTGGGACGAGATC
TGCACGAAGCTGGACCTCAATGCGCACATTCCCAAGCCAGAGCCCGAGAC
CAAGGAGGGCAAGGAGGGTGGCGAGCAGGAGAAATCAAACGAACAGGAGG
GCACTGAGGGCGACAAGATCGAGAAGGAGTTGGAGAAAGACAAGTCAAAC
GAGAAGGAGTCGACCGAGGAGAACAAAGAGAAGAGGAAACAAAGGCAAGC
TTTCTAGACCAT
FMO10002.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fax-RD | 3274 | CG4609-RD | 114..950 | 9..844 | 4145 | 99.8 | Plus |
| fax-RE | 3209 | CG4609-RE | 58..885 | 18..844 | 4100 | 99.8 | Plus |
| fax-RC | 3153 | CG4609-RC | 784..1611 | 18..844 | 4100 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:10:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16407020..16407359 | 357..18 | 1700 | 100 | Minus |
| 3L | 28110227 | 3L | 16405501..16405838 | 692..355 | 1690 | 100 | Minus |
| 3L | 28110227 | 3L | 16405326..16405428 | 794..692 | 500 | 99 | Minus |
| 3L | 28110227 | 3L | 16405120..16405172 | 844..793 | 215 | 98.1 | Minus |
Blast to na_te.dros performed 2014-11-26 15:10:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy3 | 6973 | gypsy3 GYPSY3 6973bp | 4503..4564 | 180..242 | 114 | 66.7 | Plus |
FMO10002.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:24 Download gff for
FMO10002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fax-RD | 110..952 | 9..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:55:05 Download gff for
FMO10002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fax-RD | 110..952 | 9..852 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:10 Download gff for
FMO10002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fax-RD | 114..956 | 9..852 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:10 Download gff for
FMO10002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16405114..16405170 | 795..852 | 91 | <- | Minus |
| 3L | 16405326..16405428 | 692..794 | 99 | <- | Minus |
| 3L | 16405502..16405836 | 357..691 | 100 | <- | Minus |
| 3L | 16407021..16407359 | 18..356 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:55:05 Download gff for
FMO10002.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16398214..16398270 | 795..852 | 91 | <- | Minus |
| arm_3L | 16398426..16398528 | 692..794 | 99 | <- | Minus |
| arm_3L | 16398602..16398936 | 357..691 | 100 | <- | Minus |
| arm_3L | 16400121..16400459 | 18..356 | 100 | | Minus |
