FMO10008.5prime Sequence
1127 bp (1032 high quality bases) assembled on 2010-10-30
> FMO10008.5prime
CAGTCGACATGGCCCAGACGATGGACGACATGGTCTTCCAGTGCAGCAAT
CAAAACTCGATCTATGTGCTGAATGCCAGCTACGGTTCCTATGGGGACTA
TGGCACATATGCGGCAACAAAGCGTGAAATAAATGGCAGCCGGAGCAGAG
CAGCAAATCCAATTGGGTCGACTTGCTCGAGTGGCGTCCTGCAGCATAAA
TTCAAAACTTTCGGCAGTGCCGCAGCAACAGCAGCAGCCGCGGCAGCTGC
AGCGCCACCAGCCATGGATGCAGCAGCGGGAGGCGCAGCAAACTACGTAA
ATCCTGTCGCTACATCAATGTCAACCGCAATGTGTTCACCGGCAACGGCG
GCAACGGCGGCCCTGCAAAAACTGTTCAATTGCAGCGTCGGCGTCGCCTG
CCAAAATGTCACCCACGCCCACAGCAACCACACCAACCAAGGCAGCAGCA
GCATCAGCAGCAGCCACATCCACATCAGTGGCAGCAACAACAATGCCGCC
GCCAGCAACCATAACAATAGCTGCCTGTCGGCGGCAGGCGGAGTGGGCCT
CCAAGGCGCCCGGAATCGGAGCCGGAGTGGCGAATGCCTCGATGGCGCGG
CGGGAGCGGTTACCTCGCCAGCCGGAGGCGGAGGAGCAGGTGGCCTCCCT
CTGCTCCCAAAGAAGAAATGCACCAATGTCAAATCAGCGCTTATTGCCAA
GAAGACAAAGTTTCTCAAATATCTCGAAGAAGAAAAATGGCGCAGCAACG
CGGCAGTTCCGGAAGATGCTGGTGCCATCAGCAATGAGGCGGAGCCATCC
ACCCCGAGCGGCAACAACAACGGCGGCAACTTGAAAAATCAGAGCAACAG
TCGGGAGGCTGGAAGTGGCACTGGAAGTGGCAGTGGAAGTGGATGTGGAA
GTGGGGGGCAGCCGAACAAACCGACCAACTGGAGCATGCATAATGATGAC
ACCAGCACGTCGCTGGGCCAGCACAGCAACTACAACAGCAGCGAAATCGA
GTCCGAGCTCTACAGAGCAGCCGACATTTTGGGCCTGGTGCAGCCTTCTG
TGATATTGCCGATGCTGACTGCGAGCGCTACTTGACTGCACGACGACGAT
GAAAGCTACCTCGCCAATCCGTAATGA
FMO10008.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:10:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13594-RB | 2855 | CG13594-RB | 636..1751 | 9..1109 | 5095 | 98.1 | Plus |
| CG13594-RA | 2896 | CG13594-RA | 677..1792 | 9..1109 | 5095 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:10:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24623673..24624359 | 781..95 | 3435 | 100 | Minus |
| 2R | 25286936 | 2R | 24621390..24621654 | 1037..779 | 975 | 94.7 | Minus |
| 2R | 25286936 | 2R | 24624459..24624543 | 96..12 | 425 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:10:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2316..2427 | 410..521 | 254 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2667 | 220..494 | 251 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6965 | 310..533 | 248 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2268..2505 | 290..524 | 246 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6704..6921 | 304..516 | 241 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6880 | 382..526 | 241 | 66 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2439 | 410..524 | 202 | 69.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6692..6836 | 389..524 | 190 | 63.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1187 | 419..528 | 188 | 66.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1079..1153 | 443..517 | 168 | 69.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1502..1598 | 419..521 | 166 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2740..2885 | 410..554 | 149 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1584 | 458..524 | 146 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6818 | 431..524 | 145 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2373 | 451..521 | 132 | 67.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 120..217 | 444..540 | 118 | 59.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9150..9247 | 444..540 | 118 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6785 | 453..521 | 113 | 69 | Plus |
FMO10008.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:25 Download gff for
FMO10008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13594-RA | 672..1802 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:55:09 Download gff for
FMO10008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13594-RA | 673..1803 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:16 Download gff for
FMO10008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13594-RA | 673..1803 | 1..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:16 Download gff for
FMO10008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24621348..24621651 | 782..1073 | 94 | <- | Minus |
| 2R | 24623673..24624358 | 96..781 | 100 | <- | Minus |
| 2R | 24624460..24624548 | 3..95 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:55:09 Download gff for
FMO10008.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20508871..20509174 | 782..1073 | 94 | <- | Minus |
| arm_2R | 20511196..20511881 | 96..781 | 100 | <- | Minus |
| arm_2R | 20511983..20512071 | 3..95 | 95 | | Minus |
