FMO10014.5prime Sequence
1134 bp (1032 high quality bases) assembled on 2010-10-30
> FMO10014.5prime
CAGTCGACATGGGCAAGTCCTACGTGATAATTGCGAGAATAGCATTGCTG
CTGAATTTAATAATTGCAGCGGTTTCCCACGAAGCCAAAGATTTTGACGA
TTCAATTTTGTATAAAATTGATTTCGAAGTGCCGGATTTAGATGTGCAGC
CAAGCTTGGGCAATCAGCTGCGAACATTCTACACGCCGGATAAGGAGAAG
TACGACTGCCTGATTCCCACTTTGGAACACCAAAAAGAGGAGGAAAAGTC
CGACAAGCCAGAGTTGTCTCCAATTACTCTGCTGCAGCCCATTTTCTCCG
CCCTGACTTGCACGTACCGCATCGAGGCCTACTGGTCGTACGAAATCTGC
CATGGCCACCATGTGCGTCAGTATCACGAGGAGCGCGAAGGAAAGAACGT
CAAGTTCCAGGAGTACTACCTGGGCAAATGGACCGATGAAAAGATGGAAA
TACTGACAAAAGCCTGGCAAGCAGACATCAAGGCGGGCGTTAAGCCGAAA
TACAAAAGCCTGAAGATCGACAACACTCGGTATCCATACTTTGAGATGGA
ATACAGCGATGGCACTATGTGCGACATAATTAACGCTCCTCGCACCACAA
TGGTGCGTTATGTGTGCTATCCCCATGGTAAGAACGATATCTACTCCTTC
AAGGAGACATCCTCGTGCAATTATGAGGCCATTATACTTTCCTCGGCGCT
GTGCCCAATTCGCGCCCTTCATGCCGAAGAGACCAAGGAACTATCCATAC
AATGTTTCAACTCCGAATCGAAACCGCACAGACCGCTGAGCATGCTGCGG
TCGGAGCTAAAGGAATGGGTTGAATCCGAGGCGGATCTGCTGGGTTTCAA
GGAAAAGGCTACGGAAAATCTGTGGCCCAAGACGGATGGCGATTTGGTCA
CCCTTAACTATGGCGGTGATATGGAAAAGTCCTGCTCGAGCATTTCAGAA
TGGTGACCTGAAGGTAGACGAGACTTTCAGCAGCTCCTGCTGTCTATAGC
AGCTCTGAAACTGGACACCCATCACTGATCTGACGCCCTTATACTTTAAT
ATCGGCAGACTGCCTAACTGGGGCATGCTTGTTGAAGTACAGATTCTCGC
TATGCCGACTGTGCGTCCAGTCCACAAGAATAGA
FMO10014.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:11:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6766-RA | 1882 | CG6766-RA | 109..1244 | 9..1127 | 5055 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:11:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12039424..12040202 | 1038..268 | 3585 | 98.8 | Minus |
| 2L | 23513712 | 2L | 12040438..12040581 | 152..9 | 720 | 100 | Minus |
| 2L | 23513712 | 2L | 12040265..12040379 | 267..153 | 575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:11:09 has no hits.
FMO10014.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:28 Download gff for
FMO10014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6766-RA | 95..1191 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:55:15 Download gff for
FMO10014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6766-RA | 102..1198 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:22 Download gff for
FMO10014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6766-RA | 102..1198 | 1..1082 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:22 Download gff for
FMO10014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12039384..12040202 | 268..1073 | 97 | <- | Minus |
| 2L | 12040265..12040379 | 153..267 | 100 | <- | Minus |
| 2L | 12040438..12040588 | 1..152 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:55:15 Download gff for
FMO10014.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12039384..12040202 | 268..1073 | 97 | <- | Minus |
| arm_2L | 12040265..12040379 | 153..267 | 100 | <- | Minus |
| arm_2L | 12040438..12040588 | 1..152 | 97 | | Minus |
