FMO10016.5prime Sequence
1153 bp (1050 high quality bases) assembled on 2010-10-30
> FMO10016.5prime
CAGTCGACATGTCTGCTCTACGAATATTGGCCCGATTTGTCAGCACTAGG
ACTCTGCGAATTCGTCCGATTCTGGAGATTCCCGCACGCTGCAAGTACAC
CCAACATCAAGGAGTTAAGGGCATTCGGAACAGGAAGAGCTTCTTCGAAG
CCCAAATTCAGGCAGGTCAACAAGGTGAGGAGGATGCGGACTTAGAGCGG
ACAGCCAATAGCGATCTGGCGGATATGCGGTTCTTGGATGATCGAGCCTA
CGACGAGGTGGCTGGAGGAGCCATGAGAATCACACGTGACATAGCCAGCT
CTCAGCAGGTGCTCATCCTCCAACCGTATGTAAAATGGGCAGCCAAACGA
CAGAACGCACCCGTCGATGTTCGGCCCGAGGATCAACTCGCGGAGGCCAC
AGCGCTGATCCACTCCCTGCCCAATTGGCAGGTGGCCAGGGCATTAAAGG
TTCCCCTCGAAAGCCTCGAAAAGAAGACGCTTTTCGGCAGCGGCAAGCTG
GTGGAACTCAAGGAACTGGTCGCCGAATTGCGGCAGGAACGGCATCTAAC
TTGCCTGTTTGTCAGCAAGGGGACACTATCATTCGCCCAAAAACGTTTCC
TGGAGGCGGAGTTTCGCCTGCCAGTAATGGATCGCTATTCCGTTGTTATA
CAGATACTAAGACTGCATGCCACCAGCGCCGAAGCAAAACTGCAGGTAGC
CATGGCTGAACTTCCTTACATTTGGGCGCAGGCTAAGGATGCCAGTGTTA
CGCAGACGCGTCGTCAGGGCTACGCCTTGACCGATCTGCAGAAGGAGATT
CTGCGAACCAGGGAGCGAAAGTTGCGAGCGGAATTAGATCGTGTCCGGCG
ACAGAGGCAGTTGCTTCGCCAGAAAAGAAAACAGCAAAATTATCCCATCG
TTGCAGTGGTGGGTTACACAATGCTGGCAGACTTCCTTGATCAGGCACTC
ACAGTCGAGGATGCCACTGCAGCCCAGGAATCAGTGTTCGCAACGCTTGA
TGTGACTGCTCATGCTGGTTGTTGCCATGCATCTGGAGGTGATCTATTAT
GACCGGGTGGGCTTTATGTCGATCTGCAACCGGAACTGTTTTGAATGCTC
GGGTACTTGGAGGATGCCATGCGTGCCGAGTATAATGCAGATCCAGAATA
CTT
FMO10016.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:11:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42488-RB | 2158 | CG42488-RB | 409..1532 | 8..1122 | 5160 | 98 | Plus |
CG5116-RB | 2158 | CG5116-RB | 409..1532 | 8..1122 | 5160 | 98 | Plus |
CG5116-RA | 2380 | CG5116-RA | 257..1380 | 8..1122 | 5160 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:11:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25483851..25484304 | 244..697 | 2270 | 100 | Plus |
3R | 32079331 | 3R | 25484359..25484762 | 694..1091 | 1505 | 96 | Plus |
3R | 32079331 | 3R | 25483561..25483797 | 8..244 | 1185 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:11:13 has no hits.
FMO10016.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:28 Download gff for
FMO10016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5116-RA | 247..1390 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:55:17 Download gff for
FMO10016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5116-RA | 250..1393 | 1..1136 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:23 Download gff for
FMO10016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5116-RA | 250..1393 | 1..1136 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:23 Download gff for
FMO10016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25483554..25483797 | 1..244 | 98 | -> | Plus |
3R | 25483852..25484302 | 245..695 | 100 | -> | Plus |
3R | 25484361..25484804 | 696..1132 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:55:17 Download gff for
FMO10016.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21309276..21309519 | 1..244 | 98 | -> | Plus |
arm_3R | 21309574..21310024 | 245..695 | 100 | -> | Plus |
arm_3R | 21310083..21310526 | 696..1132 | 94 | | Plus |