FMO10018.5prime Sequence
1121 bp (1027 high quality bases) assembled on 2010-10-30
> FMO10018.5prime
CAGTCGACATGTGTATATCGGAAACTAAGGAACCTCCGCATCTTCCAATT
TCCAATTCTGCAGGACAAATATCCAAAATGCTGAAGCCGGCCCAGAACAA
GTCCGAAATGGAGGGAGGTAAGCCCGTGGCGGTGGTCTACGCCACCGGCT
CATCCGCGCGCAACAGCGGAAGTGCTAGCGGCATCGGCAACGTGGGACGC
ATGGGCGCCTTTAGTCAGATGGGCAGTCAAGGGCAGTTTATACGACTGCA
GGACAACGGACTGTCCATTCCAAAAACAGAAGCAGGTACCACCTACACCA
CCGTTTCGGCGCAAAAGACTTCGGGTGCTGGCAGTGGTCATTACGACTTG
CCCTTGAAGGGAGATCGCTATGTGAAGTTTACACCAAATCCCATAAAAAT
GAAATCAAAACTCCATGCCATTCAGAGCAACTCGTTGCACTCCATGTCGG
CCTCCTCATCGTCCGTTCAAAGGAAACGCAAGCCGGACAAGGCAGGCAAA
GGTTTGCGCCATTTCTCGATGAAGGTATGCGAAAAGGTGGAGGAGAAGGG
CAAGACCACCTACAATGAGGTGGCCGACGACCTGGTCAGCGAGGAGATGA
AGAACAATGCGTACGACAACAACTGTGATCAAAAGAATATCCGACGTCGT
GTCTACGATGCGCTCAACGTACTGATGGCAATCAATGTTATTTCCAAGGA
CAAGAAGGAGATTCGCTGGATAGGACTGCCCGCAAATTCGACAGAGACAT
TTCTGGCCCTGGAAGAGGAAAACTGTCAGCGCCGCGAGCGAATAAAACAG
AAAAACGAAATGTTGCGCGAAATGATCATGCAGCATGTGGCGTTCAAGGG
ATTGGTCGAGCGGAACAAGCGAAACGAGAGCCAAGGCGTGGTGCCTTCCC
CGAATGCCTCGATCCAGCTACCGTTCATCATCGTGAACACCGCACAAGTC
CACGAAAATCACTGCAGTGTGACCAACGACAAGTCCGAATACTATTCAAG
TTCGACAAAACTCGAAATGCACGATGGACATGTAGGGTGCTCCAGCGTAG
GGGATTCCTATGGGACTGGGATAAAGGGCGAAAGGCCGCGAGAACATTGA
ACGATTCAAGTCTTGGTGCTC
FMO10018.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:11:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dp-RB | 2448 | CG4654-RB | 91..1200 | 9..1116 | 5160 | 98.1 | Plus |
| Dp-RA | 2526 | CG4654-RA | 680..1735 | 63..1116 | 4890 | 98 | Plus |
| Dp-RC | 1913 | CG4654-RC | 69..1122 | 62..1116 | 4840 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:11:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13226002..13226335 | 413..746 | 1670 | 100 | Plus |
| 2R | 25286936 | 2R | 13226402..13226641 | 745..984 | 1105 | 99.2 | Plus |
| 2R | 25286936 | 2R | 13225412..13225625 | 9..222 | 1070 | 100 | Plus |
| 2R | 25286936 | 2R | 13225807..13225938 | 281..412 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 13225690..13225751 | 221..282 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:11:16 has no hits.
FMO10018.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:29 Download gff for
FMO10018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RB | 83..1203 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:55:19 Download gff for
FMO10018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RB | 85..1205 | 1..1121 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:25 Download gff for
FMO10018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dp-RB | 85..1205 | 1..1121 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:25 Download gff for
FMO10018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13225406..13225624 | 1..221 | 98 | -> | Plus |
| 2R | 13225691..13225751 | 222..282 | 100 | -> | Plus |
| 2R | 13225809..13225938 | 283..412 | 100 | -> | Plus |
| 2R | 13226002..13226335 | 413..746 | 100 | -> | Plus |
| 2R | 13226404..13226639 | 747..982 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:55:19 Download gff for
FMO10018.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9112911..9113129 | 1..221 | 98 | -> | Plus |
| arm_2R | 9113196..9113256 | 222..282 | 100 | -> | Plus |
| arm_2R | 9113314..9113443 | 283..412 | 100 | -> | Plus |
| arm_2R | 9113507..9113840 | 413..746 | 100 | -> | Plus |
| arm_2R | 9113909..9114144 | 747..982 | 99 | -> | Plus |
