FMO10019.5prime Sequence
1156 bp (1025 high quality bases) assembled on 2010-10-30
> FMO10019.5prime
CAGTCGACATGACAACACATTCACTCTCAGCCGGAGAAATGGACATTGTC
ATACGTGAGGAGGACATTTCTTTGGCCCAAATTGGCGTCTATGCCTCTGT
GTCCTTTCTCGTTGTTTCTGCAGTTGGGGCAGCGCTGTATACCACCTGCT
CAAAACGCTATCGCCTGAACTGGTTCGAACAAAATCTCCTGGAGTCCGCC
AACGAAAAGGATGAAGATCAGCAAAGGGAGGCTTTGGTTGCCGGTGCCGT
GGGCTACAATGTGGACAACGTGAACGAGGTACCGCGTGGGAAATACAGCA
GCGGAAATGCCGGTAACCTCAGCCCCACCTCTCTGAAAAGCGAGGACAAT
GACCCGGCCTTTTGGGTGCCGGCTTCAGTCACCTCCACGGCAGCCATCCA
GCAACAAGTGTCCAATACCACCGAGGAGTCCGCACCGCCAACATCACCCA
CCGGGAGCCTGAAGTCAAACACCTTGTCCTACTGTTCCACCACCTCCGTG
CCAATCGCGAGATCTGATAAGCATGTGGTCCTTGCTATGCATCCGAGCCG
TCCCAGAGTTTCCTCTATGAACGCCAAGCTGGATCACACCAAAATCGACA
TGACCTTGTATAGAAGTCATTCTCAGCCGAAGACTATCAATCCAGTTTCA
CTCAACGAAGTTCGGGGTAATTTGCATGTGAGTCTTGGCTACGATCCAGT
TGGAGGATTGCTAAATGTTCGACTCCTGGAGGCCCAGAATCTGCAACCGA
GGCAATTTAGTGGAACTGCCGACCCATATGCCAAAGTCCGCTTGCTGCCG
GATAAAAAGAACTTTTGGCAGACGCGTATACACAAGAGGACCCTGAATCC
AGTTTTCGACGAGCAGTTTGTTTTTGAGGTAACAGCCGGAGTAATTGACA
AGCGTACTGTGGAAATTTTACTATACGACTTTGATGCTTATTCCCGGCAC
GTTTGCATCGGAGGAAGTAGCTACATTTGGGCCAACTTGAACTCAGCGAG
CAATTGAAGTTGTGGACTCCCTCTTAGTTCTGCCTCGCCAAAATATGAAA
GGTGGAATTTGGGCGATATAAATGTGTTCCCTAGCCTATTTGCCATCAGC
GGAACGTTGATTGTCGCCCTTATCAAGCACGACTGCGATGGCACACATTG
CCGGAA
FMO10019.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:11:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sytalpha-RB | 1931 | CG5559-RB | 65..1189 | 9..1132 | 5280 | 98.4 | Plus |
| Sytalpha-RC | 2189 | CG5559-RC | 333..1447 | 19..1132 | 5230 | 98.4 | Plus |
| Sytalpha-RA | 2037 | CG5559-RA | 181..1295 | 19..1132 | 5230 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:11:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 17601451..17601843 | 225..617 | 1965 | 100 | Plus |
| 2L | 23513712 | 2L | 17601912..17602146 | 618..852 | 1175 | 100 | Plus |
| 2L | 23513712 | 2L | 17600941..17601149 | 19..227 | 1045 | 100 | Plus |
| 2L | 23513712 | 2L | 17602203..17602480 | 850..1127 | 870 | 90.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:11:20 has no hits.
FMO10019.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:30 Download gff for
FMO10019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5559-RA | 174..1295 | 12..1132 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:55:20 Download gff for
FMO10019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sytalpha-RB | 65..1189 | 9..1132 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:27 Download gff for
FMO10019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sytalpha-RB | 65..1189 | 9..1132 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:27 Download gff for
FMO10019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 17600938..17601148 | 16..226 | 99 | -> | Plus |
| 2L | 17601453..17601843 | 227..617 | 100 | -> | Plus |
| 2L | 17601912..17602146 | 618..852 | 100 | -> | Plus |
| 2L | 17602206..17602498 | 853..1139 | 92 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:55:20 Download gff for
FMO10019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 17600938..17601148 | 16..226 | 99 | -> | Plus |
| arm_2L | 17601453..17601843 | 227..617 | 100 | -> | Plus |
| arm_2L | 17601912..17602146 | 618..852 | 100 | -> | Plus |
| arm_2L | 17602206..17602498 | 853..1139 | 92 | -> | Plus |
