FMO10021.5prime Sequence
1150 bp (1050 high quality bases) assembled on 2010-10-30
> FMO10021.5prime
CAGTCGACATGTTAACTATCAATTTGTTACTGGCGGTCGGAGCTCTTTTT
TGGATTTATTTCTTATGGAGTCGCCGAAGGTTATATTTCCTGATGCTAAA
GATTCCCGGACCCATAGGACTACCCATTTTGGGTAGCTCCCTGGAAAATA
TCATCACCTATAAACGTAAACTAAGCTTTCGAACAAAGTATTTGAATAAG
TACGGCTCGACTATTTTAACGTGGATGGGTCCGGTGCCATTTATAGTGAC
ACGAGATCCGAAAGTCGTTGAGGATATCTTTTCGTCTCCTGATTGCCACA
ACAAGAGCCAGCATATTGTGAATGCCATAACTTCTTGTATGGGAAATGGA
TTGCTGGGAAAACAAGATCCTCATTGGCTTGATCGCCGCAAGCACTTTAA
CCCATCGTTTAAACAGGATCTTTTGCTTAGCTTCTTTCACATTTTCGATG
CCGAGACGAAAGTCCTGATGAATTTACTAGATACTTATGTCGACAAAGGC
GAAATAGATGTGGTTCCAGAGATGCTTAGATGGTCTTTTAAAATAGCCGC
CCAAACCACAATGGGTTCTGAAGTTAAACATGATGAGCACTTCAAAAATG
GCAGCCTCGTGGAAAGCTTCGAATCGCTCATATCTCATTCGACTCTCAAT
ATATTGATGCCCTTGGTTCAAAACAGGATGATTTCAAAAATATGCGGTTA
TGATAAGTTACGAGCTGACAACTTTTCTAGAATTCAAAAAATGTTGGACA
ACGTGGTTAATAAAAAAGTCAATCCATTGCCAAAGACTGATTCAGATCCC
GAATCGAACATTGTGATCAATAGGGCAATGGAACTGTACCGTAAAGGCGA
TATCACCTATATGGATGTGAAGAGCGAATGTTGTATAATGATTGCCGCCG
GCTATGATACATCAGCTCTAACAGTTTATCACGCACTCTTCCTACTGGCC
AATCATCCCGAGCACCAGGAAGCGGTCTTTGAGAGCTAAATGGTGTCTTC
CCAGAATGCCGGACACCTTTGGATAACATACCCAGAAAATGCAGAACCTG
GACTACTTGGAGCGCGGTGATAAGGAGACACTACGCCCTGATACTGCTAT
CATAACGCAGGAACCAAGAATGAGTTCGTCTCCTCGAATGGATTTCATTC
FMO10021.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:11:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp313a1-RA | 1623 | CG3360-RA | 55..1198 | 9..1146 | 5260 | 98.1 | Plus |
| Cyp313a3-RA | 1777 | CG10093-RA | 196..446 | 47..297 | 190 | 72.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:11:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14522173..14522506 | 753..1087 | 1380 | 96.1 | Plus |
| 3R | 32079331 | 3R | 14521338..14521538 | 166..366 | 1005 | 100 | Plus |
| 3R | 32079331 | 3R | 14521601..14521788 | 365..552 | 940 | 100 | Plus |
| 3R | 32079331 | 3R | 14521103..14521264 | 9..170 | 810 | 100 | Plus |
| 3R | 32079331 | 3R | 14521996..14522131 | 626..761 | 650 | 98.5 | Plus |
| 3R | 32079331 | 3R | 14521850..14521923 | 553..626 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:11:24 has no hits.
FMO10021.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:30 Download gff for
FMO10021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a1-RA | 23..1132 | 1..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:55:23 Download gff for
FMO10021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a1-RA | 45..1154 | 1..1106 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:29 Download gff for
FMO10021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp313a1-RA | 45..1154 | 1..1106 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:29 Download gff for
FMO10021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14521093..14521259 | 1..165 | 97 | -> | Plus |
| 3R | 14521338..14521538 | 166..366 | 100 | -> | Plus |
| 3R | 14521603..14521788 | 367..552 | 100 | -> | Plus |
| 3R | 14521850..14521922 | 553..625 | 100 | -> | Plus |
| 3R | 14521996..14522122 | 626..752 | 100 | -> | Plus |
| 3R | 14522173..14522528 | 753..1106 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:55:23 Download gff for
FMO10021.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10347325..10347510 | 367..552 | 100 | -> | Plus |
| arm_3R | 10347572..10347644 | 553..625 | 100 | -> | Plus |
| arm_3R | 10347718..10347844 | 626..752 | 100 | -> | Plus |
| arm_3R | 10346815..10346981 | 1..165 | 97 | -> | Plus |
| arm_3R | 10347060..10347260 | 166..366 | 100 | -> | Plus |
| arm_3R | 10347895..10348250 | 753..1106 | 96 | | Plus |
