FMO10027.5prime Sequence
527 bp (527 high quality bases) assembled on 2010-10-30
> FMO10027.5prime
CAGTCGACATGATGGGAAGCAATTATCCCGAGCACGGGACCAAGCCGAGA
TCCGCCAAATACCACAAACAACAGAACCACCGAGTGGTGCGCAAGCAGCC
GCCGCGTCCCGCTGTTAGCGACCGCCACAACATCTACATCACCAGCAAGA
CAGACTTTAAGGCCCAGCAGCGCCGCTGCGAGGAGCTGATTAACTCCGGC
GCCCACGAGATCTTTCTGCATTGCATGGGCTTCTCCGTAACCCGCGGCCT
CAATATCGCCCTACGCCTCGTCCAGAATTCTGACGGCGCCCTTAGCTACG
CCATCAACACCTCCACCGTTCAGCTGGTGGACGAACTGCACCCGCTGTGC
GATGCCGAGGACATAACCTTCCGCCAGCGCAACAACTCGGCCCTGCACAT
CAAGATCCTCAATAACAGTCTCTTCGACATCGCCGTGCCGCAACCGTCGC
AGTCCCAGACGCAAGCCCAGTCCCTGGGCCAGTTCCGAGGCAAGGCGAAG
GCCAGGCAGGCAAGCTTTCTAGACCAT
FMO10027.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:11:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpp20-RB | 1395 | CG33931-RB | 99..599 | 9..509 | 2505 | 100 | Plus |
| Rpp20-RA | 1244 | CG33931-RA | 99..599 | 9..509 | 2505 | 100 | Plus |
| CG33932-RB | 1395 | CG33932-RB | 99..599 | 9..509 | 2505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:11:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19744753..19745102 | 160..509 | 1750 | 100 | Plus |
| X | 23542271 | X | 19744529..19744683 | 9..163 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:11:41 has no hits.
FMO10027.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:33 Download gff for
FMO10027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpp20-RA | 97..601 | 9..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:55:33 Download gff for
FMO10027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpp20-RA | 99..603 | 9..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:38 Download gff for
FMO10027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33932-RB | 99..603 | 9..515 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:38 Download gff for
FMO10027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19744529..19744685 | 9..167 | 98 | -> | Plus |
| X | 19744761..19745106 | 168..515 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:55:33 Download gff for
FMO10027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19638562..19638718 | 9..167 | 98 | -> | Plus |
| arm_X | 19638794..19639139 | 168..515 | 99 | | Plus |
