FMO10030.5prime Sequence
1051 bp (1041 high quality bases) assembled on 2010-10-30
> FMO10030.5prime
CAGTCGACATGTATAAGGGTGGTCGGACACCTTCTATTAGGTCCAGTGAA
AGGCGTCGTCCTCAAAGTGTTTCATCTATATCCACACTATCCCCGAGAGT
TGTTTTGTCCAGATTGGAGCCGAGGGAGTTTGAACGTCTTCGACTATCCT
ACAAAATTGCAATCGACCAAAGAAGATCCAGAAGCTGCCGTGGCATGAAC
ATGGGTCAAAAAATTAGTGGCGGAGTCAAAACAGTTAGTCGCAATGATTC
ACAGTCTACATTTAAACCAATAATACCAAGAGAGTTGCAAGCTGATTTCG
TTAAACCAGCGCGAATCGATATATTACTTGATATGCCGCCAGCATCTCGA
GATCTTCAATTGAAGCATTCATGGAACTCCGAAGATCGGTCTCTTAACAT
TTTTGTAAAAGAGGACGACAAGTTGACATTTCATAGGCACCCAGTGGCTC
AAAGTACTGACTGTATTCGCGGAAAAGTCGGACTTACAAAGGGATTGCAT
ATTTGGGAAATTTATTGGCCAACAAGGCAAAGAGGAACCCACGCTGTTGT
TGGCGTATGCACTGCAGATGCACCTTTACATTCAGTTGGCTACCAAAGTT
TAGTTGGATCAACTGAACAAAGTTGGGGCTGGGACTTAGGAAGAAATAAA
TTATACCATGACTCAAAAAACTGCGCTGGAGTGACATATCCAGCAATTCT
TAAAAACGACGAAGCTTTTTTAGTTCCAGATAAGTTCTTAGTAGCGTTAG
ATATGGACGAAGGAACACTAAGCTTCATTGTTGATCAGCAGTACCTCGGT
ATTGCGTTTAGAGGACTGCGAGGGAAAAAACTATATCCAATTGTTTCGGC
GGTCTGGGGACACTGTGAAATAACAATGCGTTACATTGGTGGATTAGATC
CCGAACCCTTGCCCTAATGGATCTTTGCCGAGAACAATTCGTCAAAATTG
GTCGCACAAACTTGGAGGAGCACATTCAACAGCTTCACTTCCTTTATTAA
TGAAAACATATTTTATTGTATAAAACCGTAGAGCAAGCCTTCCTAGACCA
T
FMO10030.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:11:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gus-RM | 1525 | CG2944-RM | 163..1191 | 9..1032 | 4970 | 99.2 | Plus |
| gus-RK | 1813 | CG2944-RK | 332..1360 | 9..1032 | 4970 | 99.2 | Plus |
| gus-RJ | 1730 | CG2944-RJ | 368..1396 | 9..1032 | 4970 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:11:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 5120763..5121652 | 900..11 | 4450 | 100 | Minus |
| 2R | 25286936 | 2R | 5117674..5117802 | 1025..901 | 370 | 94.6 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:11:51 has no hits.
FMO10030.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:35 Download gff for
FMO10030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RB | 81..1117 | 1..1036 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:55:37 Download gff for
FMO10030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RJ | 368..1399 | 9..1036 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:43 Download gff for
FMO10030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gus-RJ | 368..1399 | 9..1036 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:43 Download gff for
FMO10030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 5117663..5117802 | 901..1036 | 92 | <- | Minus |
| 2R | 5120763..5121652 | 11..900 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:55:37 Download gff for
FMO10030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 1005168..1005307 | 901..1036 | 92 | <- | Minus |
| arm_2R | 1008268..1009157 | 11..900 | 100 | | Minus |
