FMO10032.5prime Sequence
1140 bp (1038 high quality bases) assembled on 2010-10-30
> FMO10032.5prime
CAGTCGACATGAATCACCTTGGCGTTTTTGAAACCCGTTTTCGCCCTCGA
ACTAGGCACAAATCGCAGAGGGCACAATTGATTCCAGAACAAATCACAAT
GCGCACAGCTGTTTTGCTGCCACTTTTGGCCCTGCTGGCGGTGGCTCAGG
CCGTTTCCTTCGCCGACGTGGTCATGGAGGAATGGCATACGTTCAAGCTG
GAGCACCGCAAGAACTATCAGGATGAAACCGAGGAGCGTTTCCGCCTCAA
GATCTTCAATGAGAACAAGCACAAGATTGCCAAGCACAACCAGCGATTCG
CCGAGGGCAAGGTGAGCTTCAAACTGGCGGTCAATAAGTACGCCGATTTG
CTGCACCACGAATTCCGTCAGCTGATGAACGGCTTCAACTACACTCTGCA
CAAGCAACTGCGTGCCGCCGATGAAAGCTTCAAGGGAGTCACCTTCATCT
CGCCGGCTCATGTGACGCTGCCCAAATCTGTGGACTGGCGCACCAAGGGA
GCTGTGACCGCCGTCAAGGATCAGGGACACTGCGGCAGCTGCTGGGCCTT
CTCCAGCACAGGCGCCCTCGAGGGTCAGCATTTCCGCAAGTCCGGTGTCC
TCGTCTCGCTGTCCGAGCAGAATCTGGTCGATTGCTCCACCAAGTACGGC
AACAATGGATGCAACGGCGGTCTCATGGACAATGCCTTCCGCTATATTAA
GGATAATGGAGGCATCGATACCGAGAAGTCCTATCCCTACGAGGCCATCG
ATGACTCGTGCCACTTTAACAAGGGCACAGTCGGAGCCACCGATCGTGGA
TTCACCGATATTCCCCAGGGTGATGAGAAGAAGATGGCCGAGGCTGTGGC
CACCGTTGGTCCCGTTTCCGTCGCCATCGATGCCTCCCACGAGTCGTTCC
AGTTCTACTCGGAGGGCGTCTACAACGAGCCGCAGTGTGATGCCCAGAAT
CTGGATCACGTGTGCTGTCGTTGCTTCGCACCGACGAGTCCGGCGAGATT
ACTGGCTGTGAAAAACTCGTGGGGACCACCTGGGGGCGAACAGGCTTCAT
CAGATGCTGCGCAACAGAGAACAGTCGGCATCGCTAGCGCCCTCCAGCTA
TCCTGGTCCAAGCTTCTAGAACCATTCGTTTGGGGCCGGC
FMO10032.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:11:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cp1-RC | 1369 | CG6692-RC | 14..1119 | 9..1103 | 5130 | 98.4 | Plus |
| Cp1-RA | 1486 | CG6692-RA | 201..1236 | 79..1103 | 4780 | 98.3 | Plus |
| Cp1-RD | 1481 | CG6692-RD | 313..1231 | 196..1103 | 4195 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:11:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13967029..13967691 | 412..1066 | 2810 | 97.7 | Plus |
| 2R | 25286936 | 2R | 13966753..13966969 | 196..412 | 1085 | 100 | Plus |
| 2R | 25286936 | 2R | 13962219..13962336 | 80..197 | 590 | 100 | Plus |
| 2R | 25286936 | 2R | 13961194..13961265 | 9..80 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:11:58 has no hits.
FMO10032.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:36 Download gff for
FMO10032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp1-RC | 7..1132 | 1..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:55:41 Download gff for
FMO10032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp1-RC | 7..1132 | 1..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:47 Download gff for
FMO10032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cp1-RC | 7..1132 | 1..1113 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:47 Download gff for
FMO10032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13961187..13961265 | 1..80 | 95 | -> | Plus |
| 2R | 13962220..13962336 | 81..197 | 100 | -> | Plus |
| 2R | 13966755..13966969 | 198..412 | 100 | -> | Plus |
| 2R | 13967030..13967744 | 413..1113 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:55:41 Download gff for
FMO10032.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9854260..9854474 | 198..412 | 100 | -> | Plus |
| arm_2R | 9848692..9848770 | 1..80 | 95 | -> | Plus |
| arm_2R | 9849725..9849841 | 81..197 | 100 | -> | Plus |
| arm_2R | 9854535..9855249 | 413..1113 | 96 | | Plus |
