FMO10033.5prime Sequence
1096 bp (1013 high quality bases) assembled on 2010-10-30
> FMO10033.5prime
CAGTCGACATGACAAAGAGACTGAGAATGAAGCGTGAAATGAACGATGAA
GGGGAGGGACCACAGGACCAGAAGCGCAATCGCCGCAACGAGGAGACCGT
TCGCATACTGATTCCGAGCAGTATTGCTGGGGCTGTCATTGGCAAAGGAG
GACAGCACATTCAGAAGATGAGGACTCAGTATAAAGCCACTGTGTCTGTC
GACGATTCCCAAGGCCCCGAACGAACCATCCAAATATCGGCGGATATAGA
GTCCACATTGGAGATTATCACCGAAATGCTGAAATACTTTGAGGAGCGCG
ACGAGGACTTTGATGTGCGTCTACTTATACACCAGAGCTTGGCCGGCTGC
GTCATTGGCAAAGGTGGACAAAAGATCAAGGAGATCCGCGATCGCATCGG
CTGCCGCTTTTTGAAGGTCTTCTCGAATGTGGCACCACAGAGCACAGATC
GAGTGGTGCAGACCGTTGGCAAGCAGAGCCAGGTCATCGAAGCGGTTCGT
GAGGTGATCACACTTACACGGGACACTCCCATCAAGGGGGCGATACATAA
CTATGATCCTATGAACTTTGACCGCGTATATGCCGATGAGTACGGTGGCT
ATGGCACTGGAAGTGGCAGTACCCGTCCAAGTCAGCGGGGAAACAATCGT
AACGGAGGAGGCGCTGGAGGTGTTGCCGGCGGCGCAGCCGGTGGCAATGG
TGGAGGATTCAATGCTGGCGGTGCACGCGGCAATGCTGGCGGACGTGGCG
GAGCTGATCGCTTTGGCGGCGCCGCTGGTGGAGCTGTGGCCGGTGCTGGA
ATGGGGCAGCGCGACAATCCGTTCATTAATCCGTGGGCCAATGGCGGTGG
CGGTGATGTAGATGGGTTTGGCAACAACGCTGGTGGTGCTGGTGGATTTG
CCGGTAACAGCTTTGGCGGTGGCGCCGTGGACCATTCGGAGTGGTAGCTT
TGGCAACACCGGTTTCGAGGTGGACCCACCGACTTTGCGGAAATTCGGAA
CTTTGGACAAGGCCATGGCACTAACAGTCTGCCAAGCCTGGTTAGCTTCA
CAGAACAGGGTGACAAACACCCGCCAGCTTGGGCGCTTTGTCCGAA
FMO10033.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:12:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bl-RC | 2127 | CG13425-RC | 237..1334 | 7..1090 | 4995 | 97.7 | Plus |
| bl-RF | 2078 | CG13425-RF | 197..1285 | 16..1090 | 4950 | 97.7 | Plus |
| bl-RE | 2101 | CG13425-RE | 195..1283 | 16..1090 | 4950 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:12:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20604696..20605359 | 393..1050 | 2920 | 97.7 | Plus |
| 2R | 25286936 | 2R | 20595557..20595663 | 16..122 | 535 | 100 | Plus |
| 2R | 25286936 | 2R | 20598597..20598694 | 295..392 | 490 | 100 | Plus |
| 2R | 25286936 | 2R | 20598452..20598525 | 223..296 | 370 | 100 | Plus |
| 2R | 25286936 | 2R | 20595758..20595814 | 123..179 | 285 | 100 | Plus |
| 2R | 25286936 | 2R | 20597545..20597591 | 177..223 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:12:01 has no hits.
FMO10033.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-11-12 12:04:36 Download gff for
FMO10033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bl-RC | 279..1347 | 1..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 19:55:44 Download gff for
FMO10033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bl-RC | 233..1301 | 1..1062 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:51:49 Download gff for
FMO10033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bl-RC | 233..1301 | 1..1062 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:51:49 Download gff for
FMO10033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20598599..20598694 | 297..392 | 100 | -> | Plus |
| 2R | 20595546..20595663 | 4..122 | 95 | -> | Plus |
| 2R | 20595758..20595814 | 123..179 | 100 | -> | Plus |
| 2R | 20597548..20597591 | 180..223 | 100 | -> | Plus |
| 2R | 20598453..20598525 | 224..296 | 100 | -> | Plus |
| 2R | 20604696..20605348 | 393..1039 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 19:55:44 Download gff for
FMO10033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16485958..16486030 | 224..296 | 100 | -> | Plus |
| arm_2R | 16486104..16486199 | 297..392 | 100 | -> | Plus |
| arm_2R | 16483051..16483168 | 4..122 | 95 | -> | Plus |
| arm_2R | 16483263..16483319 | 123..179 | 100 | -> | Plus |
| arm_2R | 16485053..16485096 | 180..223 | 100 | -> | Plus |
| arm_2R | 16492201..16492853 | 393..1039 | 98 | == | Plus |
